Gene omics information

Query gene ID	Zm.9633.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.9633.1.S1_at	BM380839	-	-	2e+1	At5g55507	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.29	28.1	ZmAffx.303.1.A1_at	AI670436	-	-	1e+1	At5g07700	MYB76 (myb domain protein 76)	S.X.	H.G.	Please select
0.21	15.5	ZmAffx.372.1.S1_at	AI673888	-	-	8e-1	At3g59680	unknown protein	S.X.	H.G.	Please select
0.15	8.6	Zm.2468.1.S1_at	AW120207	hypothetical protein LOC100191330	-	2e+0	At4g39190	unknown protein	S.X.	H.G.	Please select
0.14	7.7	ZmAffx.1119.1.S1_at	AW267407	-	-	3e+0	At4g33625	unknown protein	S.X.	H.G.	Please select
0.13	6.8	Zm.9407.1.A1_at	BM268507	plastid-lipid-associated protein 2	-	3e-2	At4g04020	FIB (FIBRILLIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.2	99.4	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
18.5	99.2	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
15.3	98.9	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.0	97.7	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.8	97.6	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.8	97.6	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.9	97.3	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.5	97.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	Zm.607.1.A1_at	AF326495.1	plasma membrane integral protein ZmPIP2-6	-	2e-25	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.19301.1.A1_at	CO522517	hypothetical protein LOC100194280	-	4e-1	At2g04864	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.1008.1.A1_at	BE639475	actin binding protein	-	2e+1	At5g51520	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.04	2e+0	32	ZmAffx.80.1.A1_at	AI665268	hypothetical protein LOC100278886	-	3e+0	At2g07721	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	ZmAffx.80.1.S1_at	AI665268	-	-	3e+0	At2g07721	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.9769.1.A1_at	BM338306	-	-	8e-2	At3g09960	calcineurin-like phosphoesterase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8719.1.A1_at	BM332824	hypothetical protein LOC100275009	-	6e+0	At4g34770	auxin-responsive family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6333.1.A1_at	AY109180.1	transaminase/ transferase, transferring nitrogenous groups	-	5e-7	At4g33680	AGD2 (ABERRANT GROWTH AND DEATH 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5865.1.A1_at	AI737975	CDT1a protein	-	2e+0	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At5g55507	835644	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OFMP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-1	36	Glycine max	GmaAffx.92056.1.S1_s_at	CF807781	-	-	1e+0	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	C.G.	S.X.	Please select
0.13	5e-26	117	Hordeum vulgare	Contig11767_at	Contig11767	-	-	1e-1	At4g14620	unknown protein	C.G.	S.X.	Please select
0.15	8e-22	105	Oryza sativa	Os03g0796600	AK105257.1	-	Uncharacterized plant-specific protein DUF506domain containing protein	2e-2	At2g23320	WRKY15	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e+0	32	Populus trichocarpa	PtpAffx.44217.1.A1_at	CV240801	-	-	2e+0	At1g76110	high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	1e-37	157	Triticum aestivum	Ta.4835.1.A1_at	CD926106	-	-	1e-1	At2g25720	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1617463_at	CF511225	hypothetical protein LOC100242878	-	2e-6	At1g52670	biotin/lipoyl attachment domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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