CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.9621.1.A1_at

Gene name ethylene-responsive transcription factor 3

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.6 Zm.9621.1.A1_at BM333959 ethylene-responsive transcription factor 3 - 4e+0 At1g69490 NAP (NAC-like, activated by AP3/PI) S.X. H.G.
0.91 99.0 Zm.947.1.A1_at BF733123 - - 2e-2 At3g17180 scpl33 (serine carboxypeptidase-like 33) S.X. H.G.
0.71 88.2 Zm.9620.1.A1_at CA403653 alginate regulatory protein AlgP - 2e+0 At1g11850 unknown protein S.X. H.G.
0.50 65.7 Zm.11836.1.A1_s_at BM381136 hypothetical protein LOC100193763 - 3e-1 At1g52470 hydrolase S.X. H.G.
0.32 33.4 Zm.9117.1.A1_at CF636944 hypothetical protein LOC100274722 - 4e-1 At1g71865 unknown protein S.X. H.G.
0.13 6.8 Zm.9333.1.A1_at BM347779 - - 1e+0 At3g58720 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.0 98.6 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.9 98.6 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.3 98.2 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.8 97.9 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.2 97.8 GSM206298 Lower pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.2 97.4 GSM206291 Upper pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.7 97.2 GSM206297 Lower pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.6 97.1 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.0 96.7 GSM206302 Upper pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.5 96.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 36 Zm.7992.1.S1_at BM340530 dcp1-like decapping family protein - 3e-6 At1g08370 DCP1 (decapping 1) C.G. S.X.
0.02 1e-1 36 Zm.1762.1.A1_at CF027348 - - 1e-2 At3g43520 unknown protein C.G. S.X.
0.02 1e-1 36 Zm.14039.3.S1_a_at AF113521.1 plasminogen activator inhibitor 1 RNA-binding protein - 2e-3 At4g16830 nuclear RNA-binding protein (RGGA) C.G. S.X.
0.02 1e-1 36 Zm.14039.3.A1_at AF113521.1 - - 2e-3 At4g16830 nuclear RNA-binding protein (RGGA) C.G. S.X.
0.02 1e-1 36 Zm.11763.1.S1_at CD999409 hypothetical protein LOC100193774 - 9e-34 At3g04500 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 4e-1 34 Zm.7916.1.A1_at CF624644 - - 5e+0 At5g56710 60S ribosomal protein L31 (RPL31C) C.G. S.X.
0.01 4e-1 34 Zm.3699.3.S1_at AI649477 hypothetical protein LOC100273816 - 4e-10 At3g13460 ECT2 C.G. S.X.
0.02 4e-1 34 Zm.3077.1.A1_at CF637365 calmodulin - 4e-82 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
0.02 4e-1 34 Zm.3077.1.A1_a_at CF637365 calmodulin - 4e-82 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At1g69490 843282 NAP (NAC-like, activated by AP3/PI) Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence. - - - C.G. S.X.
0.04 1e+0 34 Glycine max GmaAffx.82693.1.S1_at AW185906 - - 4e+0 At5g53220 unknown protein C.G. S.X.
0.04 2e-3 42 Hordeum vulgare Contig4620_at Contig4620 - - 5e+0 At2g40300 ATFER4 (ferritin 4) C.G. S.X.
0.05 1e-1 38 Oryza sativa OsAffx.29056.1.S1_at - - - 0 C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.44721.1.A1_at AJ780558 hypothetical protein - 3e-7 At4g36980 unknown protein C.G. S.X.
0.05 2e-1 36 Triticum aestivum TaAffx.9198.1.S1_at CA608285 - - 6e-1 At2g04046 - C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1614256_at CB002433 hypothetical protein LOC100253803 - 2e-1 At4g18620 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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