Gene omics information

Query gene ID	Zm.9620.1.A1_at
Gene name	alginate regulatory protein AlgP
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.9620.1.A1_at	CA403653	alginate regulatory protein AlgP	-	2e+0	At1g11850	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.947.1.A1_at	BF733123	-	-	2e-2	At3g17180	scpl33 (serine carboxypeptidase-like 33)	S.X.	H.G.	Please select
0.60	77.8	Zm.9622.1.A1_at	BM350167	Hypothetical protein LOC100191225	-	6e+0	At5g42110	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.9621.1.A1_at	BM333959	ethylene-responsive transcription factor 3	-	4e+0	At1g69490	NAP (NAC-like, activated by AP3/PI)	S.X.	H.G.	Please select
0.50	65.7	Zm.11836.1.A1_s_at	BM381136	hypothetical protein LOC100193763	-	3e-1	At1g52470	hydrolase	S.X.	H.G.	Please select
0.46	58.4	Zm.6587.1.A1_at	BM378727	acyl CoA synthetase	-	1e-5	At1g64400	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.5	97.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.8	97.6	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.1	97.4	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.7	97.2	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.8	96.6	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.7	96.5	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-1	34	Zm.7156.3.S1_a_at	CF017430	hypothetical protein LOC100193362	-	2e-12	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6443.1.A1_at	CA404297	hypothetical protein AY107910	-	4e-25	At2g02560	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.6206.1.A1_at	AY109453.1	60S ribosomal protein L35	-	5e-16	At3g09500	60S ribosomal protein L35 (RPL35A)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.6206.1.S1_at	AY109453.1	-	-	5e-16	At3g09500	60S ribosomal protein L35 (RPL35A)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5605.1.S1_at	CO528780	-	-	1e+0	At1g18680	HNH endonuclease domain-containing protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.2558.1.S1_at	CF011949	aldose reductase	-	5e-8	At2g37770	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.2615.1.S1_at	CO533179	hypothetical protein LOC100279288	-	5e-5	At3g54180	CDKB1	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.15822.1.S1_at	AY313901.1	yabby14 protein	-	4e-5	At2g26580	YAB5 (YABBY5)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.14094.1.S1_at	CO519882	S-glutathione dehydrogenase/class III alcohol dehydrogenase	-	3e-3	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At1g11850	837732	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-2	40	Glycine max	PsAffx.psHB001xI18f_s_at	PsAffx.psHB001xI18f	-	-	2e+1	At5g47030	ATP synthase delta' chain, mitochondrial	C.G.	S.X.	Please select
0.05	3e-10	65	Hordeum vulgare	Contig103_s_at	Contig103	-	-	4e+0	At1g27820	CCR4-NOT transcription complex protein, putative	C.G.	S.X.	Please select
0.07	3e-7	57	Oryza sativa	Os02g0797600	AK120644.1	-	Conserved hypothetical protein	8e-5	At2g15270	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	Ptp.2451.2.S1_at	CF229175	-	-	9e-1	At2g03770	sulfotransferase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-6	52	Triticum aestivum	Ta.5330.1.S1_at	BJ280965	-	-	4e-1	At4g30670	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1613809_at	CF372821	hypothetical protein LOC100247494	-	3e-50	At1g69340	appr-1-p processing enzyme family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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