Gene omics information

Query gene ID	Zm.960.1.S1_at
Gene name	hypothetical protein LOC100274333
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	94.6	Zm.960.1.S1_at	BU093044	hypothetical protein LOC100274333	-	1e-4	At2g22830	SQE2 (squalene epoxidase 2)	S.X.	H.G.	Please select
0.62	79.8	Zm.12082.2.A1_a_at	CF636676	hypothetical protein LOC100278326	-	4e+0	At4g21216	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.6016.1.A1_at	CO534758	hypothetical protein LOC100272384	-	5e+0	Atcg01300	-	S.X.	H.G.	Please select
0.50	65.7	Zm.2724.1.S1_at	BQ538519	hypothetical protein LOC100193244	-	3e-13	At3g22960	PKP-ALPHA	S.X.	H.G.	Please select
0.44	55.7	Zm.5126.1.A1_at	CK145113	-	-	3e-2	At5g66560	phototropic-responsive NPH3 family protein	S.X.	H.G.	Please select
0.42	51.3	Zm.6023.2.A1_at	AI834127	-	-	4e+0	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	S.X.	H.G.	Please select
0.39	45.6	ZmAffx.1446.1.S1_at	40794996-4	-	-	4e+0	At5g44560	VPS2.2	S.X.	H.G.	Please select
0.39	45.6	Zm.14383.1.S1_at	AY109259.1	-	-	1e+0	At2g33780	VQ motif-containing protein	S.X.	H.G.	Please select
0.39	45.6	Zm.14176.2.S1_at	BI430937	-	-	2e-32	At1g76810	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.13405.1.A1_at	CF636947	hypothetical protein LOC100273586	-	1e-1	At4g22320	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	98.5	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.9	98.2	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.9	97.9	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.8	97.9	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.5	97.8	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.2	97.8	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.1	97.7	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.8	97.6	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.1	97.4	GSM202316	Mo17xB73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.8	97.2	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	2e-164	577	Zm.7407.2.A1_at	CK827055	-	-	3e-3	At1g58440	XF1	C.G.	S.X.	Please select
0.43	6e-128	456	Zm.7407.1.A1_a_at	BM074289	squalene monooxygenase	-	3e-7	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.43	6e-128	456	Zm.7407.1.A1_x_at	BM074289	-	-	3e-7	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.3876.1.S1_at	AY111960.1	hypothetical protein LOC100278092	-	5e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.16004.1.A1_a_at	CO533006	hypothetical protein LOC100274208 /// methionine aminopeptidase 1A	-	4e-21	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.16004.1.A1_x_at	CO533006	methionine aminopeptidase 1A	-	4e-21	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.16004.1.A1_at	CO533006	methionine aminopeptidase 1A	-	4e-21	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.13942.1.A1_at	CF637457	hypothetical protein LOC100279675	-	2e-6	At4g00585	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	ZmAffx.487.1.A1_at	AI691420	-	-	5e+0	At3g14190	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-4	48	Arabidopsis thaliana	At2g22830	816814	SQE2 (squalene epoxidase 2)	F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:integral to membrane;BOFMPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	1e-8	61	Glycine max	Gma.6225.1.S1_at	CD390358	-	-	1e-13	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.37	6e-88	323	Hordeum vulgare	Contig5809_at	Contig5809	-	-	2e-14	At1g58440	XF1	C.G.	S.X.	Please select
0.35	3e-127	456	Oryza sativa	Os03g0231800	AK065032.1	-	XF1 protein (Squalene monooxygenase, putative)	1e-18	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	3e-21	103	Populus trichocarpa	PtpAffx.212998.1.S1_s_at	pmrna25415	hypothetical protein	-	3e-15	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	1e-103	377	Triticum aestivum	Ta.7591.1.S1_at	CD872021	-	-	2e-8	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.13	6e-13	73	Vitis vinifera	1612781_at	CB978740	hypothetical protein LOC100254037	-	2e-2	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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