CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.9580.1.A1_at

Gene name hypothetical protein LOC100277774

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 81.1 Zm.9580.1.A1_at BM332976 hypothetical protein LOC100277774 - 6e+0 At5g24155 squalene monooxygenase, putative / squalene epoxidase, putative S.X. H.G.
0.67 85.8 Zm.1090.3.A1_x_at AI714811 - - 3e+0 At4g12990 unknown protein S.X. H.G.
0.46 58.4 Zm.7453.1.A1_at BM078460 Hypothetical protein LOC100192939 - 6e-3 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) S.X. H.G.
0.39 45.6 Zm.3995.1.S1_at AY107938.1 COP9 signalosome complex subunit 5b - 6e-10 At1g22920 CSN5A (COP9 SIGNALOSOME 5A) S.X. H.G.
0.38 44.2 Zm.5157.1.A1_at CF638048 - - 5e-14 At5g45030 catalytic S.X. H.G.
0.38 44.2 Zm.1209.1.S1_at AY107780.1 3-oxoacyl-synthase III - 9e-2 At1g62640 KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.6 99.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.3 99.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.5 99.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.4 99.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.2 99.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.2 99.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0 99.1 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1 99.0 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0 98.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2 96.9 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 1530 Zm.9580.1.A1_a_at BM332976 hypothetical protein LOC100277774 - 6e+0 At5g24155 squalene monooxygenase, putative / squalene epoxidase, putative C.G. S.X.
0.22 6e-60 230 Zm.9580.2.S1_at AI734597 - - 2e+0 At2g31305 INH3 (INHIBITOR-3) C.G. S.X.
0.02 7e-1 34 Zm.7361.1.A1_at AY108454.1 hypothetical protein LOC100272701 - 6e-1 At5g54360 zinc finger (C2H2 type) family protein-related C.G. S.X.
0.01 7e-1 34 Zm.272.1.A1_at AB035644.1 ferredoxin - 7e-75 At5g66190 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) C.G. S.X.
0.01 7e-1 34 Zm.14435.1.S1_at AY109360.1 60S ribosomal protein L22-2 - 3e-35 At3g05560 60S ribosomal protein L22-2 (RPL22B) C.G. S.X.
0.03 3e+0 32 ZmAffx.994.1.A1_at AI855283 - - 3e+0 At5g11360 - C.G. S.X.
0.03 3e+0 32 ZmAffx.994.1.S1_at AI855283 sphingosine-1-phosphate lyase - 3e+0 At5g11360 - C.G. S.X.
0.02 3e+0 32 Zm.9678.1.A1_at BM335903 - - 1e+0 At5g02190 PCS1 (PROMOTION OF CELL SURVIVAL 1) C.G. S.X.
0.01 3e+0 32 Zm.9549.1.S1_at AY106255.1 shaggy-related protein kinase eta - 3e-65 At4g18710 BIN2 (BRASSINOSTEROID-INSENSITIVE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At5g24155 832481 squalene monooxygenase, putative / squalene epoxidase, putative F:oxidoreductase activity;P:sterol biosynthetic process;C:endomembrane system;BFPMO - - - C.G. S.X.
0.03 9e-3 42 Glycine max PsAffx.C35000041_at PsAffx.C35000041 - - 5e-1 At4g11870 unknown protein C.G. S.X.
0.32 1e-48 192 Hordeum vulgare Contig11570_at Contig11570 - - 1e-1 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) C.G. S.X.
0.33 1e-61 238 Oryza sativa Os08g0559700 9636.m04541 - Conserved hypothetical protein 1e-2 At5g62380 ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101) C.G. S.X.
0.02 2e+0 34 Populus trichocarpa PtpAffx.54807.1.S1_at DN496805 hypothetical protein - 7e-2 At2g20130 LCV1 (LIKE COV 1) C.G. S.X.
0.40 3e-39 163 Triticum aestivum Ta.10707.1.A1_at BQ166334 - - 1e-1 At5g51120 PABN1 (POLYADENYLATE-BINDING PROTEIN 1) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1611444_at CF211599 - - 2e-1 At2g40310 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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