Gene omics information

Query gene ID	Zm.9569.1.A1_at
Gene name	polyadenylate-binding protein 2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.9569.1.A1_at	AY103610.1	polyadenylate-binding protein 2	-	5e-7	At5g65260	polyadenylate-binding protein family protein / PABP family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.5973.1.S1_at	CF636776	hypothetical protein LOC100276911	-	2e+0	At2g17705	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.12394.1.S1_at	AW519964	hypothetical protein LOC100279308	-	2e-8	At2g40550	ETG1 (E2F TARGET GENE 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.7644.2.S1_x_at	BM341428	-	-	4e+0	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.50	65.7	Zm.261.1.S1_at	CD996491	translocon at outer membrane of chloroplast34	-	1e-2	At5g05000	TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)	S.X.	H.G.	Please select
0.35	38.9	Zm.10174.1.A1_at	AY111125.1	-	-	4e+0	At2g47370	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	93.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.7	93.2	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6	92.9	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.5	92.6	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.4	92.2	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.4	92.2	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.1	90.8	GSM258203	W22 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
2.1	90.8	GSM258533	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.1	90.8	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	749	Zm.5578.1.A1_at	BG841692	polyadenylate-binding protein 2	-	2e-21	At5g51120	PABN1 (POLYADENYLATE-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.33	2e-66	252	Zm.928.1.S1_at	CO528002	Hypothetical protein LOC100194063	-	5e-17	At5g65260	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.10138.1.S1_at	BM334083	hypothetical protein LOC100193812	-	8e-7	At5g62270	-	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.18795.1.S1_at	CO526138	hypothetical protein LOC100273526	-	2e-8	At5g11350	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.8436.1.A1_at	BM074113	-	-	5e+0	At3g22900	NRPD7	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.19143.1.A1_at	CF626055	-	-	1e-11	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.1702.1.A1_at	AI964698	hypothetical protein LOC100193172	-	2e-10	At5g53580	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.13944.4.A1_at	AY104794.1	-	-	2e-1	At3g51960	bZIP family transcription factor	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.13944.4.S1_at	BE056996	hypothetical protein LOC100279975	-	2e-1	At3g51960	bZIP family transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	5e-7	56	Arabidopsis thaliana	At5g65260	836651	polyadenylate-binding protein family protein / PABP family protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	7e-35	149	Glycine max	GmaAffx.21373.1.S1_at	AW756202	-	-	3e-19	At5g10350	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select
0.46	3e-139	494	Hordeum vulgare	Contig3412_at	Contig3412	-	-	1e-10	At5g65260	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select
0.49	1e-135	484	Oryza sativa	Os06g0219600	AK060429.1	-	Poly(A)-binding protein II-like	3e-33	At5g51120	PABN1 (POLYADENYLATE-BINDING PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	2e-25	117	Populus trichocarpa	PtpAffx.17106.1.S1_s_at	CX183992	hypothetical protein	-	3e-60	At5g65260	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	3e-132	472	Triticum aestivum	Ta.2079.1.S1_at	BJ263669	-	-	3e-12	At5g10350	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select
0.23	3e-24	111	Vitis vinifera	1615041_at	CB979724	hypothetical protein LOC100250228 /// hypothetical protein LOC100255090	-	2e-43	At5g10350	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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