Gene omics information

Query gene ID	Zm.9567.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.9567.1.S1_at	BM378205	-	-	5e-10	At5g10780	-	S.X.	H.G.	Please select
0.73	89.9	Zm.1506.1.A1_at	X82184.1	defence-related protein	-	1e-1	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.60	77.8	Zm.1967.1.A1_at	BG836522	pathogenesis-related protein 10 /// pathogenesis-related protein 1	-	1e-23	At1g77180	chromatin protein family	S.X.	H.G.	Please select
0.50	65.7	Zm.11663.1.A1_at	CO531620	hypothetical protein LOC100273622	-	2e+0	At4g28170	unknown protein	S.X.	H.G.	Please select
0.19	12.8	Zm.19167.2.A1_x_at	CF636656	Hypothetical protein LOC100194096	-	9e+0	At4g13160	unknown protein	S.X.	H.G.	Please select
0.13	6.8	Zm.1297.1.S1_at	BE345371	hypothetical protein LOC100276762	-	1e+0	At1g23670	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	96.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.6	92.9	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-5	48	Zm.34.1.A2_a_at	AY109329.1	Hypothetical protein LOC100192755	-	9e-2	At2g36950	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	5e-5	48	Zm.34.1.A1_x_at	AF371261.1	opaque2 modifier	-	9e-2	At2g36950	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.2807.1.A1_at	BM334793	zinc-finger protein 1	-	7e-1	At5g57345	unknown protein	C.G.	S.X.	Please select
0.01	1e-2	40	Zm.10591.1.S1_at	BQ479053	hypothetical protein LOC100194290	-	3e-22	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.8972.1.S1_at	CD435957	hypothetical protein LOC100217237	-	7e-17	At3g54320	WRI1 (WRINKLED 1)	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.1705.1.S1_at	AW400006	hexose transporter	-	2e-4	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.8931.1.A1_at	CD975815	hypothetical protein LOC100273121	-	3e-3	At3g10410	scpl49 (serine carboxypeptidase-like 49)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.13832.1.A1_at	AI665313	hypothetical protein LOC100194404	-	3e-9	At5g57330	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.5987.1.A2_at	AF019147.1	cysteine protease component of protease-inhibitor complex	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	5e-10	65	Arabidopsis thaliana	At5g10780	830945	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	4e-8	59	Glycine max	GmaAffx.93437.1.S1_s_at	CF808942	-	-	3e-23	At5g10780	-	C.G.	S.X.	Please select
0.46	3e-127	454	Hordeum vulgare	Contig5767_at	Contig5767	-	-	1e-11	At5g10780	-	C.G.	S.X.	Please select
0.47	1e-147	523	Oryza sativa	Os.8894.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	1e-14	81	Populus trichocarpa	PtpAffx.2885.1.S1_at	CV271712	hypothetical protein	-	9e-49	At5g10780	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	4e-174	611	Triticum aestivum	TaAffx.58044.1.S1_at	CA622873	-	-	7e-8	At5g10780	-	C.G.	S.X.	Please select
0.07	6e-10	63	Vitis vinifera	1619064_at	CD800161	hypothetical protein LOC100257741	-	1e-69	At5g10780	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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