Gene omics information

Query gene ID	Zm.9566.1.S1_at
Gene name	beta-expansin 7
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.9566.1.S1_at	AF332180.1	beta-expansin 7	-	6e-1	At3g49630	2-oxoacid-dependent oxidase, putative	S.X.	H.G.	Please select
0.46	58.4	Zm.646.2.S1_at	AF129859.1	CENPCA protein	-	7e-1	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	S.X.	H.G.	Please select
0.44	55.7	Zm.10072.1.A1_at	BM378946	50S ribosomal protein L1	-	9e-19	At3g63490	ribosomal protein L1 family protein	S.X.	H.G.	Please select
0.41	49.7	Zm.14433.1.S1_at	CA401946	hypothetical protein LOC100192707	-	2e+0	At5g02310	PRT6 (PROTEOLYSIS 6)	S.X.	H.G.	Please select
0.40	48.5	Zm.4776.2.A1_at	CF026718	pyruvate dehydrogenase E1 component alpha subunit	-	1e-39	At1g59900	AT-E1 ALPHA	S.X.	H.G.	Please select
0.38	44.2	Zm.9183.1.A1_at	BM331963	-	-	7e-2	At1g77810	galactosyltransferase family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.9830.2.A1_a_at	BM341631	hypothetical protein LOC100193377	-	7e-2	At2g20613	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.5112.1.A1_at	AI600906	-	-	2e-45	Atmg00480	-	S.X.	H.G.	Please select
0.35	38.9	ZmAffx.1007.1.S1_at	AI881371	-	-	1e+1	At2g34570	MEE21 (maternal effect embryo arrest 21)	S.X.	H.G.	Please select
0.35	38.9	Zm.4044.1.A1_at	AY109936.1	hypothetical protein LOC100273897 /// hypothetical protein LOC100274738	-	5e+0	At5g13780	GCN5-related N-acetyltransferase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
66.9	100.0	GSM206289	Upper pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
28.9	99.7	GSM206295	Lower pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
26.6	99.7	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
21.2	99.4	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
14.9	98.9	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
14.8	98.9	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.7	98.6	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.9	98.3	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.1	98.0	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.4	97.8	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	718	Zm.1747.1.A1_at	CF633743	-	-	5e-1	At4g19270	unknown protein	C.G.	S.X.	Please select
0.50	6e-175	613	Zm.675.2.A1_at	AF332178.1	beta-expansin 5	-	3e-1	At4g19270	unknown protein	C.G.	S.X.	Please select
0.50	6e-175	613	Zm.675.2.S1_at	AF332178.1	beta-expansin 5	-	3e-1	At4g19270	unknown protein	C.G.	S.X.	Please select
0.43	1e-145	515	Zm.17425.1.S1_at	CK145186	beta-expansin 1a	-	3e+0	At5g61510	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please select
0.34	1e-86	319	Zm.13944.1.A1_at	AF332181.1	beta-expansin 8	-	5e-2	At5g55650	unknown protein	C.G.	S.X.	Please select
0.36	4e-74	278	Zm.13944.3.S1_a_at	AA072435	Beta-expansin 8	-	3e-3	At5g40630	ubiquitin family protein	C.G.	S.X.	Please select
0.24	4e-74	278	Zm.13944.3.A1_at	AF332175.1	Beta-expansin 8	-	3e-3	At1g27250	paired amphipathic helix repeat-containing protein	C.G.	S.X.	Please select
0.30	2e-69	262	Zm.9565.1.A1_at	BM381516	beta-expansin 3	-	6e-1	At4g19270	unknown protein	C.G.	S.X.	Please select
0.32	2e-63	242	Zm.674.1.S1_at	AF332179.1	beta-expansin 6	-	9e+0	At4g26470	calcium ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At3g49630	824125	2-oxoacid-dependent oxidase, putative	F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	GmaAffx.65837.1.A1_at	CD394379	-	-	7e-1	At3g03826	unknown protein	C.G.	S.X.	Please select
0.50	9e-165	579	Hordeum vulgare	Contig2877_at	Contig2877	-	-	6e-1	At4g19270	unknown protein	C.G.	S.X.	Please select
0.50	0	648	Oryza sativa	Os10g0555900	AF261271.1	-	Beta-expansin precursor	7e-1	At4g19270	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.221014.1.S1_at	pmrna37543	hypothetical protein	-	3e-5	At2g22450	riboflavin biosynthesis protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	0	819	Triticum aestivum	TaAffx.85380.1.S1_at	CA623241	-	-	2e-1	At3g49630	2-oxoacid-dependent oxidase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1612785_at	CF515439	hypothetical protein LOC100254926	-	6e-31	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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