Gene omics information

Query gene ID	Zm.9562.1.S1_at
Gene name	aldehyde oxidase-2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.9562.1.S1_at	D88452.1	aldehyde oxidase-2	-	4e-5	At5g20960	AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)	S.X.	H.G.	Please select
0.46	58.4	Zm.1249.1.S1_at	BE575245	hypothetical protein LOC100279729	-	1e+0	At5g28180	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.31	31.6	Zm.1574.1.S1_at	AY106519.1	-	-	6e-20	At2g24320	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.16489.1.S1_at	CF637893	thiolase1	-	1e-12	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	S.X.	H.G.	Please select
0.23	18.6	Zm.4240.1.A1_at	BM337929	hypothetical protein LOC100191812	-	1e-1	At5g47620	heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative	S.X.	H.G.	Please select
0.21	15.5	Zm.9646.1.A1_at	BM334563	negatively light-regulated protein	-	5e+0	At1g32700	zinc-binding family protein	S.X.	H.G.	Please select
0.16	9.4	Zm.18885.1.A1_at	CO530040	hypothetical protein LOC100276818	-	3e+0	At5g28780	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.1	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
15.3	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	0	1600	Zm.40.1.S1_at	BM078677	-	-	9e-5	At3g43600	AAO2 (ALDEHYDE OXIDASE 2)	C.G.	S.X.	Please select
0.72	0	892	Zm.3665.1.S1_at	D88451.1	aldehyde oxidase	-	4e-2	At3g43600	AAO2 (ALDEHYDE OXIDASE 2)	C.G.	S.X.	Please select
0.10	2e-72	274	Zm.9862.1.A1_at	BM341467	-	-	2e+1	At5g53820	unknown protein	C.G.	S.X.	Please select
0.01	1e-2	42	Zm.8012.1.A1_at	CA402768	hypothetical protein LOC100216974	-	4e-12	At2g28315	-	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.17983.1.A1_at	BG840853	hypothetical protein LOC100276768	-	1e+0	At2g40910	F-box protein-related	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.14399.1.S1_at	AY615521.1	ABCF-type protein	-	1e-31	At5g09930	ATGCN2	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.14.1.S1_at	BI430690	nucleic acid binding protein1	-	1e-8	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.13196.1.S1_at	AY105985.1	t-snare	-	6e-2	At5g59210	myosin heavy chain-related	C.G.	S.X.	Please select
0.01	9e-1	36	Zm.1315.1.A1_at	BM348474	-	-	2e-3	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-5	52	Arabidopsis thaliana	At5g20960	832221	AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)	Encodes aldehyde oxidase AA01.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-3	46	Glycine max	GmaAffx.85502.1.S1_s_at	BE584044	-	-	1e+1	At3g63170	chalcone isomerase	C.G.	S.X.	Please select
0.23	6e-58	226	Hordeum vulgare	Contig15797_at	Contig15797	-	-	3e+0	At4g27270	quinone reductase family protein	C.G.	S.X.	Please select
0.51	4e-77	291	Oryza sativa	Os03g0790900	AK121857.1	-	Aldehyde oxidase-2	2e-4	At3g43600	AAO2 (ALDEHYDE OXIDASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-13	77	Populus trichocarpa	PtpAffx.222439.1.S1_at	pmrna39840	aldehyde oxidase 2	-	1e-26	At1g04580	AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	1e-171	605	Triticum aestivum	Ta.26775.1.A1_at	CD491126	-	-	2e-5	At3g43600	AAO2 (ALDEHYDE OXIDASE 2)	C.G.	S.X.	Please select
0.01	3e+0	34	Vitis vinifera	1615365_at	CB973771	hypothetical protein LOC100253158	-	2e-14	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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