Gene omics information

Query gene ID	Zm.9560.1.A1_at
Gene name	m17 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.9560.1.A1_at	BM382073	m17 protein	-	3e-2	At1g77080	-	S.X.	H.G.	Please select
0.73	89.9	Zm.18045.1.A1_at	BM080270	-	-	8e-4	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.4883.1.A1_at	AY107709.1	Hypothetical protein LOC100216906	-	2e-5	At1g07530	SCL14 (SCARECROW-LIKE 14)	S.X.	H.G.	Please select
0.60	77.8	Zm.15194.1.A1_at	BM334114	-	-	4e+0	At1g16025	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.14136.1.A1_at	AY104147.1	hypothetical protein LOC100193727	-	1e-21	At1g27340	F-box family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.6453.1.S1_at	AY106427.1	-	-	3e-1	At5g33390	glycine-rich protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.1	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.6	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	5e-30	131	Zm.336.2.A1_a_at	AW055920	Zea mays MADS29	-	2e+0	At4g37940	AGL21	C.G.	S.X.	Please select
0.09	1e-27	123	Zm.14826.1.A1_at	AJ430637.1	m23 protein	-	2e-16	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.09	1e-27	123	Zm.14826.1.S1_at	AJ430637.1	m23 protein	-	2e-16	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.08	8e-26	117	Zm.336.1.S1_at	AW144867	ER6 protein /// Zea mays MADS29	-	2e-1	At1g09740	ethylene-responsive protein, putative	C.G.	S.X.	Please select
0.13	8e-26	117	Zm.335.1.S1_a_at	BM078498	Zea mays MADS16	-	3e-2	At3g57390	AGL18	C.G.	S.X.	Please select
0.08	5e-24	111	Zm.524.1.S1_at	AF112149.1	MADS box protein 2	-	6e-17	At3g57230	AGL16 (AGAMOUS-LIKE 16)	C.G.	S.X.	Please select
0.09	2e-23	109	Zm.3907.1.S1_at	L81162.2	AGAMOUS-like protein /// M2 protein	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.07	1e-21	103	Zm.292.1.S1_at	L46397.1	MADS box protein	-	2e-7	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.07	2e-20	99	Zm.293.1.S1_at	L46398.1	MADS box protein	-	3e-3	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	40	Arabidopsis thaliana	At1g77080	844042	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-5	52	Glycine max	GmaAffx.7093.1.S1_at	BM092487	-	-	3e-21	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please select
0.15	3e-19	95	Hordeum vulgare	Contig24884_at	Contig24884	-	-	1e-1	At5g10140	FLC (FLOWERING LOCUS C)	C.G.	S.X.	Please select
0.45	2e-144	513	Oryza sativa	Os02g0170300	AK109522.1	-	MADS box protein ZMM17	4e-5	At5g51870	AGL71 (AGAMOUS-LIKE 71)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-2	40	Populus trichocarpa	PtpAffx.201624.1.S1_at	pmrna3215	-	-	2e-15	At3g54340	AP3 (APETALA 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	2e-154	545	Triticum aestivum	Ta.27569.1.A1_at	CD890142	MADS-box transcription factor TaAGL35	-	8e-2	At5g51870	AGL71 (AGAMOUS-LIKE 71)	C.G.	S.X.	Please select
0.05	1e-8	59	Vitis vinifera	1614418_at	CF414182	flowering-related B-class MADS-box protein	-	9e-15	At3g54340	AP3 (APETALA 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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