Gene omics information

Query gene ID	Zm.9555.2.A1_x_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.9555.2.A1_x_at	CK347442	-	-	3e+0	At2g22241	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.3783.1.S1_at	AW331211	Betaine aldehyde dehydrogenase	-	6e-4	At3g48170	ALDH10A9	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.392.1.A1_at	AI676820	-	-	1e+1	At2g31035	-	S.X.	H.G.	Please select
0.36	41.3	Zm.8586.1.A1_at	BM338441	-	-	1e+0	At3g13227	serine-rich protein-related	S.X.	H.G.	Please select
0.33	36.0	Zm.5115.1.A1_at	AI600917	hypothetical protein LOC100272658	-	2e-46	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	S.X.	H.G.	Please select
0.32	33.4	Zm.583.1.S1_at	AF305892.1	tangled1	-	3e-1	At1g21350	antioxidant/ oxidoreductase	S.X.	H.G.	Please select
0.32	33.4	Zm.15891.2.A1_at	BM267660	60S ribosomal protein L13-2	-	7e-31	At5g23900	60S ribosomal protein L13 (RPL13D)	S.X.	H.G.	Please select
0.30	29.8	Zm.13196.1.S1_at	AY105985.1	t-snare	-	6e-2	At5g59210	myosin heavy chain-related	S.X.	H.G.	Please select
0.28	28.1	Zm.17641.1.S1_at	CK368556	-	-	1e+0	At3g62470	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select
0.25	21.3	Zm.18815.1.A1_at	CO527279	hypothetical protein LOC100191886	-	2e+0	At4g12530	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.3	99.1	GSM253253	ZM_24h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
16.6	99.1	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
13.0	98.7	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
12.6	98.7	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
12.5	98.7	GSM253247	ZM_12h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
11.0	98.5	GSM253251	ZM_24h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
10.1	98.4	GSM202285	Mo17 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
8.5	98.1	GSM253248	ZM_12h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.2	98.0	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.9	97.9	GSM253254	ZM_24h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	1e-179	626	Zm.9555.2.A1_at	CK347442	-	-	3e+0	At2g22241	unknown protein	C.G.	S.X.	Please select
1.00	1e-179	626	Zm.9555.2.S1_at	CK347442	-	-	3e+0	At2g22241	unknown protein	C.G.	S.X.	Please select
0.38	1e-93	341	Zm.9555.1.A1_at	BM347835	-	-	1e-2	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.38	1e-93	341	Zm.9555.1.A1_a_at	BM347835	-	-	1e-2	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.38	1e-93	341	Zm.9555.1.A1_x_at	BM347835	-	-	1e-2	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.34	4e-47	186	Zm.12033.1.A1_at	BM382797	cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase	-	8e-1	At3g59840	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.7882.1.A1_at	CF637822	hypothetical protein LOC100277715	-	6e+0	At1g71330	ATNAP5	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.5696.1.A1_at	AW067308	hypothetical protein LOC100274101	-	2e-8	At5g45430	protein kinase, putative	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.15702.1.S1_at	CD440432	hypothetical protein LOC100275817	-	4e-1	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e+0	32	Arabidopsis thaliana	At2g22241	6240772	unknown protein	F:unknown;P:unknown;C:mitochondrion	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	7e-2	38	Glycine max	GmaAffx.87567.1.S1_at	BI942654	-	-	2e-1	At3g51850	CPK13	C.G.	S.X.	Please select
0.13	1e-7	56	Hordeum vulgare	HVSMEb0004J06r2_at	HVSMEb0004J06r2	-	-	3e+0	At3g23165	LCR42 (Low-molecular-weight cysteine-rich 42)	C.G.	S.X.	Please select
0.12	8e-27	121	Oryza sativa	Os11g0499600	AK106189.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	1e-3	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	Ptp.2187.2.A1_at	CK089802	-	-	1e+0	At2g07340	prefoldin-related KE2 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	6e-14	77	Triticum aestivum	Ta.17936.1.S1_at	CA626126	-	-	5e-2	At5g60615	-	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1616212_at	CD717201	-	-	3e-1	At1g01810	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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