CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.9546.1.A1_at

Gene name hypothetical protein LOC100276154

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.0 Zm.9546.1.A1_at AY105569.1 hypothetical protein LOC100276154 - 2e+0 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) S.X. H.G.
0.50 65.7 Zm.3709.1.S1_at AY105883.1 RNA recognition motif containing protein - 3e+0 At1g14340 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.42 51.3 Zm.4004.1.S1_at AY122274.1 histone acetyl transferase MYST family 101 - 1e-101 At5g64610 HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1) S.X. H.G.
0.35 38.9 Zm.803.1.A1_at CF625813 hypothetical protein LOC100274731 - 6e-1 At5g25210 unknown protein S.X. H.G.
0.31 31.6 Zm.3565.1.A1_at AW042565 - - 5e-13 At1g54590 splicing factor Prp18 family protein S.X. H.G.
0.25 21.3 Zm.13430.1.S1_at AY110858.1 invertase cell wall4 - 2e-5 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.2 98.0 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
8.1 98.0 GSM205425 B73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
8.0 98.0 GSM205429 B73xMo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.8 97.9 GSM205434 Mo17xB73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.8 97.9 GSM205433 B73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.6 97.9 GSM205420 Mo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.5 97.8 GSM205431 Mo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.8 97.6 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.7 97.6 GSM205421 B73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.2 97.4 GSM205436 B73xMo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-4 46 Zm.3814.1.S1_at AY110457.1 hypothetical protein LOC100273803 - 7e+0 At5g53200 TRY (TRIPTYCHON) C.G. S.X.
0.01 2e-1 36 Zm.957.1.S1_a_at M36087.1 mitochondrial F-1-ATPase subunit 2 - 2e-165 At5g08670 ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism C.G. S.X.
0.01 9e-1 34 Zm.6514.1.A1_at CF636002 hypothetical protein LOC100276806 - 7e-1 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) C.G. S.X.
0.01 9e-1 34 Zm.6459.1.S1_at CF647279 hypothetical protein LOC100274304 - 2e-1 At4g11430 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 9e-1 34 Zm.6062.1.A1_at CD439657 Protein disulfide isomerase - 3e-1 At1g26320 NADP-dependent oxidoreductase, putative C.G. S.X.
0.01 9e-1 34 Zm.12860.1.S1_at CA405118 - - 4e+0 At5g66140 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) C.G. S.X.
0.02 3e+0 32 Zm.9157.1.A1_at CB351321 molybdenum cofactor synthesis protein 2 large subunit - 7e+0 At1g50760 unknown protein C.G. S.X.
0.01 3e+0 32 Zm.8049.1.S1_at CF009485 hypothetical protein LOC100272989 - 3e-3 At4g05330 AGD13 (ARF-GAP domain 13) C.G. S.X.
0.01 3e+0 32 Zm.7755.1.A1_at CN845074 hypothetical protein LOC100275494 - 3e-18 At1g16460 ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At5g65080 836632 MAF5 (MADS AFFECTING FLOWERING 5) Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported. - - - C.G. S.X.
0.03 2e-1 38 Glycine max Gma.6435.1.S1_at AW597831 - - 3e-14 At5g42570 - C.G. S.X.
0.32 1e-49 196 Hordeum vulgare Contig13677_at Contig13677 - - 2e+0 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) C.G. S.X.
0.27 1e-64 248 Oryza sativa Os06g0367500 AK063619.1 - Conserved hypothetical protein 2e+0 At1g04480 60S ribosomal protein L23 (RPL23A) C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.219698.1.S1_at pmrna35682 hypothetical protein - 2e-2 At2g05910 unknown protein C.G. S.X.
0.25 6e-47 188 Triticum aestivum Ta.6140.1.S1_at BJ246920 - - 6e-1 At5g07840 ankyrin repeat family protein C.G. S.X.
0.02 9e+0 30 Vitis vinifera 1616774_at CF568877 - - 4e+0 At5g42957 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage