Gene omics information

Query gene ID	Zm.9542.1.A1_at
Gene name	hypothetical protein LOC100192045
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	90.3	Zm.9542.1.A1_at	CF624708	hypothetical protein LOC100192045	-	3e-16	At4g16170	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.8321.1.S1_at	CO528265	calcium-dependent protein kinase, isoform AK1	-	3e+0	At5g61350	protein kinase family protein	S.X.	H.G.	Please select
0.62	79.8	Zm.11551.1.A1_at	AY108861.1	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imi dazole-4-carboxamide isomerase	-	4e-1	At4g17960	unknown protein	S.X.	H.G.	Please select
0.62	79.8	Zm.18244.1.S1_at	CN844522	-	-	3e+0	At1g24260	SEP3 (SEPALLATA3)	S.X.	H.G.	Please select
0.57	75.1	Zm.1773.1.S1_at	CO524227	hypothetical protein LOC100193052 /// hypothetical protein LOC100273661 /// hypothetical protein LOC100274588	-	6e-4	At5g06370	NC domain-containing protein	S.X.	H.G.	Please select
0.50	65.7	Zm.1240.1.A1_at	AI001233	hypothetical protein LOC100274890	-	6e-3	At3g29034	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.16017.1.A1_at	CF244045	-	-	2e-4	At5g08415	lipoic acid synthase family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.16178.1.A1_s_at	BM347672	hypothetical protein LOC100275193 /// hypothetical protein LOC100276703	-	3e-5	At4g39235	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.5947.1.A1_at	AI665897	-	-	3e+0	At2g16490	XH domain-containing protein	S.X.	H.G.	Please select
0.43	52.8	Zm.3633.2.S1_x_at	CF634876	APx1 - Cytosolic Ascorbate Peroxidase	-	3e-28	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.4	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-1	36	Zm.19277.1.A1_at	CO533311	hypothetical protein LOC100273292	-	2e-3	At1g18010	-	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.9421.1.S1_at	CF627701	hypothetical protein LOC100216648	-	4e-2	At3g27380	SDH2-1	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.8151.1.S1_at	AY105847.1	-	-	3e-1	At5g59760	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.7709.1.A1_at	BM269078	hypothetical protein LOC100280092	-	5e-1	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.5739.1.S1_at	AI637197	glutamine cyclotransferase	-	1e-2	At4g25720	QC (GLUTAMINYL CYCLASE)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.438.1.S1_at	AF133840.1	heat-shock protein 101	-	3e-14	At1g74310	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.3157.2.A1_at	CD447942	ubiquitin carboxyl-terminal hydrolase 6	-	5e-15	At1g51710	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.19079.1.A1_at	CO526857	hypothetical protein LOC100273657	-	1e-5	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.16513.9.A1_a_at	CD444572	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e-16	87	Arabidopsis thaliana	At4g16170	827309	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	Gma.6595.1.S1_at	BM309622	-	-	2e-1	At1g51600	TIFY2A	C.G.	S.X.	Please select
0.69	0	1378	Hordeum vulgare	Contig12404_at	Contig12404	-	-	5e-15	At4g16170	unknown protein	C.G.	S.X.	Please select
0.56	0	749	Oryza sativa	Os03g0310500	AK068123.1	-	CAP protein family protein	2e-14	At4g16170	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	6e-6	54	Populus trichocarpa	PtpAffx.209078.1.S1_s_at	pmrna17953	hypothetical protein	-	6e-17	At4g16170	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	1023	Triticum aestivum	Ta.10176.1.S1_at	CK159075	-	-	4e-15	At4g16170	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Vitis vinifera	1620527_at	CD713784	-	-	3e-1	At5g20650	COPT5	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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