Gene omics information

Query gene ID	Zm.9526.1.A1_at
Gene name	long-chain-fatty-acid-CoA ligase-like protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.9526.1.A1_at	AY110244.1	long-chain-fatty-acid-CoA ligase-like protein	-	2e-3	At3g16170	acyl-activating enzyme 13 (AAE13)	S.X.	H.G.	Please select
0.73	89.9	Zm.15338.1.A1_at	AI491631	hypothetical protein LOC100194288	-	5e-7	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	S.X.	H.G.	Please select
0.56	74.4	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	S.X.	H.G.	Please select
0.55	71.6	Zm.16508.1.S1_x_at	BE510313	ribosomal protein L39	-	4e-13	At4g31985	60S ribosomal protein L39 (RPL39C)	S.X.	H.G.	Please select
0.55	71.6	Zm.8357.1.A1_at	BM267266	-	-	1e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.36	41.3	Zm.9998.1.A1_at	BM335619	-	-	3e-1	At5g57010	calmodulin-binding family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	97.7	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.5	95.1	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.2	94.5	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
3.2	94.5	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.0	94.0	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.9	93.8	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
2.8	93.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.6	92.9	GSM258203	W22 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
2.5	92.6	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	ZmAffx.757.1.A1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	ZmAffx.757.1.S1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.15742.1.A1_at	CD446346	-	-	8e+0	Atmg00820	-	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8800.1.A1_at	BM075702	-	-	3e-1	At5g03000	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5161.1.S1_at	CD437341	leafbladeless1	-	1e+0	At1g54170	CID3 (CTC-Interacting Domain 3)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5008.1.A1_at	AY108557.1	hypothetical protein LOC100275589	-	2e-29	At5g54870	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.30.4.S1_at	CD441407	-	-	1e+0	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.17666.1.A1_at	CF635462	hypothetical protein LOC100272483	-	2e+0	At5g25460	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.14689.1.S1_at	BM341363	hypothetical protein LOC100277287	-	7e-7	At2g43180	catalytic	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-3	44	Arabidopsis thaliana	At3g16170	820862	acyl-activating enzyme 13 (AAE13)	F:catalytic activity, AMP binding;P:metabolic process;C:membrane;BOFMPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-2	40	Glycine max	Gma.10663.1.S1_at	BE659116	-	-	2e-25	At3g16170	acyl-activating enzyme 13 (AAE13)	C.G.	S.X.	Please select
0.50	2e-124	444	Hordeum vulgare	Contig7912_at	Contig7912	-	-	2e-10	At3g16170	acyl-activating enzyme 13 (AAE13)	C.G.	S.X.	Please select
0.44	5e-104	379	Oryza sativa	Os01g0761300	NM_191333.1	-	Long-chain-fatty-acid-CoA ligase-like protein	7e-8	At3g16170	acyl-activating enzyme 13 (AAE13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	6e-7	56	Populus trichocarpa	PtpAffx.15351.1.S1_a_at	CV227554	hypothetical protein	-	7e-26	At3g16170	acyl-activating enzyme 13 (AAE13)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	1e-112	406	Triticum aestivum	Ta.14522.3.A1_x_at	CK157446	-	-	2e-3	At3g16170	acyl-activating enzyme 13 (AAE13)	C.G.	S.X.	Please select
0.17	5e-10	63	Vitis vinifera	1609153_at	CF202966.1	hypothetical protein LOC100258310	-	3e-11	At3g16170	acyl-activating enzyme 13 (AAE13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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