Gene omics information

Query gene ID	Zm.9482.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.9482.1.A1_at	BM269229	-	-	5e+0	At5g50020	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.842.1.S1_at	AI770597	-	-	3e+0	At3g15900	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.2226.1.A1_at	BE129637	structural molecule	-	5e-7	At5g54110	ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED)	S.X.	H.G.	Please select
0.40	48.5	Zm.11594.1.S1_at	BM379195	hypothetical protein LOC100277981	-	2e+0	At5g50175	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.13490.1.A1_at	CD997217	-	-	4e-8	At3g54670	TTN8 (TITAN8)	S.X.	H.G.	Please select
0.31	31.6	Zm.16301.1.S1_at	CK787019	-	-	5e+0	At5g46730	glycine-rich protein	S.X.	H.G.	Please select
0.30	29.8	Zm.10485.1.S1_at	BQ528490	hypothetical protein LOC100193633	-	6e+0	At3g03150	unknown protein	S.X.	H.G.	Please select
0.23	18.6	Zm.17157.1.A1_at	BM074525	-	-	4e+0	At5g22970	unknown protein	S.X.	H.G.	Please select
0.22	16.9	Zm.12287.1.A1_at	CD568394	glucan endo-1,3-beta-glucosidase 3	-	4e-8	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.0	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
19.7	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM258537	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	32	Zm.7870.1.S1_at	BU582061	activator of 90 kDa heat shock protein ATPase	-	1e-5	At3g12050	Aha1 domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.15804.1.S1_at	CA405323	-	-	9e-22	At1g65430	zinc finger protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.14493.1.S1_at	AY107976.1	-	-	5e-1	At1g02840	SR1	C.G.	S.X.	Please select
0.03	8e+0	30	ZmAffx.614.1.A1_at	AI715042	-	-	1e+1	At5g56710	60S ribosomal protein L31 (RPL31C)	C.G.	S.X.	Please select
0.03	8e+0	30	ZmAffx.614.1.S1_at	AI715042	-	-	1e+1	At5g56710	60S ribosomal protein L31 (RPL31C)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.99.1.A1_at	AY106851.1	ferritin1	-	7e-7	At2g40300	ATFER4 (ferritin 4)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.6884.1.S1_at	AI065628	ribose-phosphate pyrophosphokinase 4	-	3e-9	At2g42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.578.1.S1_at	AF112150.1	MADS box protein 3	-	3e-3	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.543.1.S1_at	AF244678.1	glutathione transferase13	-	2e+0	At1g72210	basic helix-loop-helix (bHLH) family protein (bHLH096)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g50020	835066	zinc finger (DHHC type) family protein	F:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	PsAffx.C4000013_at	PsAffx.C4000013	-	-	2e+0	At2g45760	BAP2 (BON ASSOCIATION PROTEIN 2)	C.G.	S.X.	Please select
0.03	9e+0	30	Hordeum vulgare	Contig25041_at	Contig25041	-	-	4e+0	At2g17770	ATBZIP27	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os02g0141000	AK121058.1	-	-	6e-3	At3g28940	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.77482.1.S1_at	BU823371	-	-	9e-14	At3g16857	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	TaAffx.93420.1.S1_at	BJ211519	-	-	8e-1	At2g17055	disease resistance protein-related	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1620115_at	CB340805	-	-	3e+0	At2g29920	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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