Gene omics information

Query gene ID	Zm.9415.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.9415.2.A1_at	BM348481	-	-	7e-2	At5g01075	beta-galactosidase	S.X.	H.G.	Please select
0.73	89.9	Zm.6398.1.A1_at	CA398579	transposon protein Mutator sub-class	-	3e+0	At2g43660	glycosyl hydrolase family protein 17	S.X.	H.G.	Please select
0.63	81.1	Zm.157.1.S1_at	AY107763.1	catalase2	-	3e-22	At4g35090	CAT2 (CATALASE 2)	S.X.	H.G.	Please select
0.59	76.1	ZmAffx.1315.1.S1_at	40794996-143	-	-	2e+0	At5g41080	glycerophosphoryl diester phosphodiesterase family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.5008.1.A1_at	AY108557.1	hypothetical protein LOC100275589	-	2e-29	At5g54870	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.6927.2.A1_a_at	CF038958	hypothetical protein LOC100194137	-	1e-20	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	S.X.	H.G.	Please select
0.52	67.3	ZmAffx.744.1.S1_at	AI745738	-	-	1e-1	At1g48300	unknown protein	S.X.	H.G.	Please select
0.51	66.4	Zm.2163.1.S1_at	AY105593.1	-	-	2e-4	At3g59400	GUN4	S.X.	H.G.	Please select
0.50	65.7	Zm.3623.1.S1_at	BG873827	hypothetical protein LOC100216808	-	7e+0	At5g52440	HCF106	S.X.	H.G.	Please select
0.49	61.9	Zm.16861.2.S1_at	AW498347	L-ascorbate oxidase	-	7e-4	At1g55570	sks12 (SKU5 Similar 12)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
44.3	100.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.0	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.0	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.1	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.5	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.4	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	2e-169	593	Zm.9415.1.A1_at	BM341676	-	-	7e-2	At5g01075	beta-galactosidase	C.G.	S.X.	Please select
0.51	1e-75	282	Zm.17055.1.S1_at	CF972499	-	-	2e-2	At1g12665	-	C.G.	S.X.	Please select
0.12	1e-16	85	Zm.18404.1.S1_at	CO521356	hypothetical protein LOC100278048	-	2e+0	At5g30341	unknown protein	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.13943.1.S1_at	CK826833	CUE domain containing protein	-	7e-4	At5g32440	-	C.G.	S.X.	Please select
0.02	7e-3	40	Zm.18430.1.S1_at	CO524429	hypothetical protein LOC100272360	-	3e-9	At1g03030	phosphoribulokinase/uridine kinase family protein	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.5020.1.S1_at	AI600437	hypothetical protein LOC100216870	-	1e-5	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.4610.1.A1_at	AY104297.1	-	-	5e+0	Atmg01350	-	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.4610.1.S1_at	AY104297.1	-	-	5e+0	Atmg01350	-	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.19226.1.A1_at	BI396135	hypothetical protein LOC100193127	-	5e+0	At5g55570	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	7e-2	38	Arabidopsis thaliana	At5g01075	831885	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:endomembrane system, beta-galactosidase complex;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e-2	38	Glycine max	PsAffx.CL2400Contig1_at	PsAffx.CL2400Contig1	-	-	3e-1	At5g01075	beta-galactosidase	C.G.	S.X.	Please select
0.13	4e-23	107	Hordeum vulgare	Contig15254_at	Contig15254	-	-	2e+0	At2g05752	unknown protein	C.G.	S.X.	Please select
0.15	2e-19	97	Oryza sativa	Os05g0138000	AK120814.1	-	Conserved hypothetical protein	1e-3	At5g08330	TCP family transcription factor, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.204196.1.S1_at	pmrna8260	hypothetical protein	-	5e-2	At5g40120	AGL76 (AGAMOUS-LIKE 76)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	9e-23	107	Triticum aestivum	Ta.16547.1.S1_x_at	CA608295	-	-	2e+0	At3g26420	ATRZ-1A	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1621626_at	BQ797187	hypothetical protein LOC100244502	-	8e-13	At5g57660	zinc finger (B-box type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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