Gene omics information

Query gene ID	Zm.9396.1.A1_x_at
Gene name	early light-inducible protein ELIP
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.9396.1.A1_x_at	CB350631	early light-inducible protein ELIP	-	5e+1	At5g35090	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.7707.2.A1_at	BM334255	-	-	5e+0	At4g38930	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please select
0.80	94.0	Zm.7707.1.S1_a_at	CK985938	Hypothetical protein LOC100193555	-	1e-2	At4g37210	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please select
0.36	41.3	Zm.1630.1.S1_at	AW927809	-	-	4e-1	At2g34340	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.188.1.S1_s_at	CF017153	yptm1 protein	-	2e-34	At3g11730	ATFP8	S.X.	H.G.	Please select
0.15	8.6	Zm.445.2.A1_at	AF457968.1	Lipoxygenase	-	4e+0	At5g47600	heat shock protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.3	99.9	GSM202412	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep1	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
35.3	99.9	GSM202278	B73 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
23.2	99.5	GSM202277	Mo17 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
22.6	99.5	GSM202279	Mo17xB73 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
21.4	99.4	GSM202280	B73xMo17 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
19.1	99.2	GSM202286	B73 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
11.0	98.5	GSM202414	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep3	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
9.8	98.3	GSM202288	B73xMo17 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
8.6	98.1	GSM258200	W22 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
7.9	97.9	GSM202287	Mo17xB73 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	5e-145	511	Zm.657.1.S1_s_at	AF365951.1	early light-inducible protein ELIP	-	3e-5	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	C.G.	S.X.	Please select
0.15	5e-31	133	Zm.8882.1.S1_at	BG320046	-	-	1e+1	At1g36732	CPuORF19 (Conserved peptide upstream open reading frame 19)	C.G.	S.X.	Please select
0.01	2e-2	38	Zm.16923.1.A1_at	AI374569	hypothetical protein LOC100193833	-	7e-36	At2g34430	LHB1B1	C.G.	S.X.	Please select
0.03	2e-2	38	Zm.16923.3.A1_at	BQ619322	chlorophyll a-b binding protein 2	-	2e-50	At2g34430	LHB1B1	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.15442.1.A1_at	BM379425	Light-harvesting chlorophyll a/b binding protein	-	9e-37	At2g34420	LHB1B2	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.14486.1.A1_at	AI964508	chlorophyll a-b binding protein 6A	-	6e-7	At3g54890	LHCA1	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.13239.2.A1_at	BG517281	hypothetical protein LOC100274453	-	1e-32	At2g34430	LHB1B1	C.G.	S.X.	Please select
0.03	2e-2	38	Zm.13239.3.S1_at	BI319068	chlorophyll a-b binding protein 2	-	9e-46	At2g34420	LHB1B2	C.G.	S.X.	Please select
0.02	8e-2	36	Zm.6473.1.A1_at	AI692021	hypothetical protein LOC100272330	-	4e-2	At4g22730	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+1	28	Arabidopsis thaliana	At5g35090	833460	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	36	Glycine max	HgAffx.5293.1.S1_at	CD748131	-	-	8e+0	At5g23650	myb family transcription factor	C.G.	S.X.	Please select
0.29	2e-33	141	Hordeum vulgare	Contig3429_at	Contig3429	-	-	7e-2	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	C.G.	S.X.	Please select
0.20	8e-27	121	Oryza sativa	Os07g0178700	9635.m00764	-	Early light-inducible protein	1e-4	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.212231.1.S1_at	pmrna23977	-	-	1e+0	At1g77400	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	2e-26	119	Triticum aestivum	Ta.20594.1.S1_at	CA486033	-	-	1e-6	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1622521_at	BQ795423	-	-	5e-15	At5g10330	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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