CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.9376.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.8 Zm.9376.1.A1_at BM332576 - - 1e+0 At5g06330 hairpin-responsive protein, putative (HIN1) S.X. H.G.
0.44 55.7 Zm.8239.1.A1_s_at BM073390 hypothetical protein LOC100277448 - 5e+0 At5g46430 60S ribosomal protein L32 (RPL32B) S.X. H.G.
0.42 51.3 Zm.13188.1.A1_x_at AY103625.1 hypothetical protein LOC100193556 - 5e-32 At3g11940 ATRPS5A (RIBOSOMAL PROTEIN 5A) S.X. H.G.
0.32 33.4 Zm.15080.1.A1_at AY103815.1 - - 5e-65 At3g55410 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative S.X. H.G.
0.32 33.4 Zm.8239.1.A1_at BM073390 hypothetical protein LOC100277448 - 5e+0 At5g46430 60S ribosomal protein L32 (RPL32B) S.X. H.G.
0.19 12.8 Zm.13536.1.S1_at AY108312.1 hypothetical protein LOC100272500 - 3e-1 At4g19980 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.3 99.1 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
12.2 98.6 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.7 98.6 GSM206292 Upper pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.6 98.6 GSM206295 Lower pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.1 98.5 GSM206298 Lower pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.5 98.3 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.2 98.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2 98.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM206291 Upper pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
8.4 98.1 GSM206289 Upper pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-44 178 Zm.4756.1.A1_at AI739818 - - 3e+0 At1g74660 MIF1 (MINI ZINC FINGER 1) C.G. S.X.
0.16 5e-10 63 Zm.8685.1.A1_at CB351143 - - 5e+0 At5g27820 ribosomal protein L18 family protein C.G. S.X.
0.13 1e-7 56 Zm.12376.1.S1_at BQ577893 - - 4e+0 At3g44280 unknown protein C.G. S.X.
0.07 8e-3 40 Zm.9661.1.A1_at BM335503 - - 4e+0 At5g04470 SIM (SIAMESE) C.G. S.X.
0.04 3e-2 38 Zm.2538.1.A1_at BM336091 hypothetical protein LOC100278766 - 4e+0 At4g01935 unknown protein C.G. S.X.
0.05 1e-1 36 Zm.9804.1.A1_at CD956095 - - 4e+0 At3g22230 60S ribosomal protein L27 (RPL27B) C.G. S.X.
0.09 5e-1 34 Zm.9979.1.A1_at BM350622 - - 5e+0 At4g02380 SAG21 (SENESCENCE-ASSOCIATED GENE 21) C.G. S.X.
0.07 5e-1 34 Zm.17689.1.S1_at CK370194 - - 3e+0 At1g63055 unknown protein C.G. S.X.
0.04 5e-1 34 Zm.17365.1.S1_at CK371220 - - 5e+0 At3g25011 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g06330 830521 hairpin-responsive protein, putative (HIN1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.92654.1.S1_at CF808379 - - 2e-41 At1g16470 PAB1 (PROTEASOME SUBUNIT PAB1) C.G. S.X.
0.03 8e+0 30 Hordeum vulgare HA05g22r_x_at HA05g22r - - 4e-2 At1g47960 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) C.G. S.X.
0.03 2e+0 34 Oryza sativa Os03g0842200 9631.m06177 - - 5e+0 At4g01580 transcriptional factor B3 family protein C.G. S.X.
0.03 6e+0 32 Populus trichocarpa PtpAffx.220592.1.S1_at pmrna36997 hypothetical protein - 1e+1 At5g28660 - C.G. S.X.
0.06 4e+0 32 Triticum aestivum TaAffx.56153.1.S1_at CA656635 - - 6e-1 At2g04800 unknown protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1615298_s_at BQ793084 - - 9e-1 At2g43910 thiol methyltransferase, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage