Gene omics information

Query gene ID	Zm.9361.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.9361.1.A1_at	BM349541	-	-	5e+0	At4g09580	-	S.X.	H.G.	Please select
0.60	77.8	Zm.10375.1.S1_at	BQ703821	-	-	2e-17	At2g35360	ubiquitin family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.12641.1.S1_at	BU097542	glucan endo-1,3-beta-glucosidase	-	9e-3	At3g55430	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.8911.1.A1_at	BM350783	-	-	4e-2	At5g23540	26S proteasome regulatory subunit, putative	S.X.	H.G.	Please select
0.35	38.9	Zm.13252.1.S1_at	U50816.1	-	-	6e-1	At4g34730	ribosome-binding factor A family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.2269.1.S1_at	CF631922	-	-	1e-7	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.9	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.7	95.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM206293	Right pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Zm.17368.1.S1_at	CK371524	-	-	9e-1	At3g30260	AGL79 (AGAMOUS-LIKE 79)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12224.1.S1_at	CK370517	hypothetical protein LOC100278972	-	8e+0	At4g24380	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zm.943.1.A1_at	BF729547	CID11	-	1e+0	At5g42240	scpl42 (serine carboxypeptidase-like 42)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.9135.1.A1_at	BQ538300	small GTP-binding protein domain	-	7e-4	At2g30100	ubiquitin family protein	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.5070.1.A1_at	AY108736.1	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.5070.1.S1_at	AY108736.1	Hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.3299.1.S1_at	AY105026.1	-	-	2e-1	At3g43150	unknown protein	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.16713.1.A1_at	AY108582.1	hypothetical protein LOC100192650	-	3e+0	At2g40590	40S ribosomal protein S26 (RPS26B)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.15527.1.A1_at	CK145031	hypothetical protein LOC100274385	-	4e-3	At2g30560	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At4g09580	826542	-	F:unknown;P:biological_process unknown;C:endoplasmic reticulum;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	PsAffx.CL2327Contig1_at	PsAffx.CL2327Contig1	-	-	3e+0	At1g08480	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	Contig25549_at	Contig25549	-	-	1e+0	At5g36240	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.03	9e+0	32	Oryza sativa	Os07g0242100	NM_186803.1	-	-	2e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e+0	32	Populus trichocarpa	PtpAffx.21409.1.S1_at	DN491709	-	-	1e-19	At1g09960	SUT4 (SUCROSE TRANSPORTER 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.51509.1.S1_x_at	CA724198	-	-	3e+0	At1g61930	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1615490_x_at	CK138118.1	-	-	3e-1	At3g55590	GDP-mannose pyrophosphorylase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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