Gene omics information

Query gene ID	Zm.9333.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.9333.1.A1_at	BM347779	-	-	1e+0	At3g58720	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.14618.1.A1_at	BM080545	-	-	6e+0	At5g64530	XND1	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.1201.1.S1_at	BE128817	hypothetical protein LOC100193669	-	8e-1	At2g18970	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.4022.2.A1_at	AY109470.1	glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a	-	2e+0	At3g06860	MFP2 (MULTIFUNCTIONAL PROTEIN 2)	S.X.	H.G.	Please select
0.37	42.3	Zm.7819.1.A1_at	BM080027	-	-	5e+0	At5g20935	unknown protein	S.X.	H.G.	Please select
0.24	19.8	Zm.11570.1.A1_at	CF057654	-	-	1e+0	At5g05550	transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.5	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	3e-64	244	Zm.19271.1.A1_at	CO522612	hypothetical protein LOC100274689	-	3e-4	At1g17980	nucleotidyltransferase family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.3255.2.A1_a_at	BM073865	hypothetical protein LOC100194287	-	1e+0	At1g49720	ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1)	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.3255.2.A1_x_at	BM073865	hypothetical protein LOC100194287	-	1e+0	At1g49720	ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.14595.1.A1_at	BM348816	hypothetical protein LOC100217284	-	5e+0	At5g37750	heat shock protein binding / unfolded protein binding	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4780.1.S1_at	CF057781	-	-	3e+0	At4g31580	SRZ-22	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4273.1.A1_at	CF626426	hypothetical protein LOC100217188	-	6e-15	At1g79930	HSP91	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.15915.1.S1_at	AI964614	-	-	3e-7	At2g45770	CPFTSY	C.G.	S.X.	Please select
0.01	8e+0	30	ZmAffx.5.1.S1_at	AY372246.1	cellulose synthase catalytic subunit 12	-	4e-26	At5g17420	IRX3 (IRREGULAR XYLEM 3)	C.G.	S.X.	Please select
0.04	8e+0	30	ZmAffx.1148.1.A1_at	AW424424	Hypothetical protein LOC100193074	-	7e+0	At1g77885	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g58720	825041	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.24385.1.S1_at	BF013702	-	-	5e-2	At1g73030	VPS46.2	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig14579_s_at	Contig14579	-	-	5e-2	At1g78480	prenyltransferase/squalene oxidase repeat-containing protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os.40386.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.8891.1.A1_a_at	CV260378	hypothetical protein	-	7e-31	At3g04770	RPSAb (40S ribosomal protein SA B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.54106.1.S1_at	CA685704	-	-	1e+1	At3g03420	Ku70-binding family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1616862_at	CB343429	hypothetical protein LOC100250930	-	1e+0	At2g19385	zinc ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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