Gene omics information

Query gene ID	Zm.9290.1.A1_at
Gene name	hypothetical protein LOC100192546
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.9290.1.A1_at	AY108360.1	hypothetical protein LOC100192546	-	7e-1	At5g58260	-	S.X.	H.G.	Please select
0.60	77.8	Zm.14792.1.A1_at	AI666236	-	-	4e+0	At3g62340	WRKY68	S.X.	H.G.	Please select
0.50	65.7	Zm.2614.2.S1_at	CD436098	-	-	2e+0	At5g17930	binding / protein binding	S.X.	H.G.	Please select
0.46	58.4	Zm.17724.1.S1_a_at	CF623515	hypothetical protein LOC100278419	-	1e+0	At3g56240	CCH (COPPER CHAPERONE)	S.X.	H.G.	Please select
0.36	41.3	Zm.13417.1.A1_at	CA400681	hypothetical protein LOC100193979	-	4e-1	At3g05830	-	S.X.	H.G.	Please select
0.33	36.0	Zm.12433.1.S1_s_at	AY105016.1	tyrosyl-tRNA synthetase	-	4e-18	At2g33840	tRNA synthetase class I (W and Y) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	98.2	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.6	98.1	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.5	98.1	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.2	98.0	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.3	97.8	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.1	97.7	GSM253257	ZM_2d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.0	97.7	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.6	97.6	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.5	97.5	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-9	61	Zm.12031.1.A1_at	BM382777	-	-	2e+1	At5g05650	-	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.1017.1.A1_at	AI881523	Hypothetical protein LOC100193713	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.1017.1.S1_at	AI881523	Hypothetical protein LOC100193713	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.513.1.S1_at	AF250050.1	retinoblastoma-related protein 1	-	2e-6	At3g12280	RBR1 (RETINOBLASTOMA-RELATED 1)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.513.1.S2_at	AF007793.1	retinoblastoma-related protein 1	-	2e-6	At3g12280	RBR1 (RETINOBLASTOMA-RELATED 1)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.4882.1.S1_at	BE644445	hypothetical protein LOC100193470 /// hypothetical protein LOC100273280 /// yabby15	-	2e-11	At4g00180	YAB3 (YABBY3)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.19254.1.A1_at	CD651670	hypothetical protein LOC100191179	-	1e-36	At3g55360	CER10	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.1896.1.S1_at	AY313902.1	yabby15 protein	-	6e-11	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	C.G.	S.X.	Please select
0.02	1e+0	34	ZmAffx.1062.1.A1_at	AI881950	-	-	3e+0	At4g12040	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-1	36	Arabidopsis thaliana	At5g58260	835938	-	Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e+0	34	Glycine max	PsAffx.CL763Contig1_at	PsAffx.CL763Contig1	-	-	6e-2	At5g27690	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.41	0	664	Hordeum vulgare	Contig8541_at	Contig8541	-	-	1e-1	At5g58260	-	C.G.	S.X.	Please select
0.46	0	648	Oryza sativa	Os01g0882500	9629.m06545	-	Conserved hypothetical protein	1e-3	At5g58260	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	7e-11	69	Populus trichocarpa	PtpAffx.19419.1.S1_at	CV280607	hypothetical protein	-	2e-16	At5g58260	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	6e-168	591	Triticum aestivum	Ta.24783.1.S1_x_at	BG908171	-	-	1e-1	At5g58260	-	C.G.	S.X.	Please select
0.17	5e-8	57	Vitis vinifera	1616930_at	CA809522	hypothetical protein LOC100248423	-	3e-14	At5g58260	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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