Gene omics information

Query gene ID	Zm.9283.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.58	75.1	Zm.9283.1.A1_at	BM267774	-	-	1e+0	At2g20930	-	S.X.	H.G.	Please select
0.46	58.4	Zm.9672.1.A1_at	BM349283	-	-	7e-2	At5g58412	-	S.X.	H.G.	Please select
0.33	36.0	Zm.17209.1.A1_at	BM073068	hypothetical protein LOC100272669	-	6e+0	At5g51880	iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	S.X.	H.G.	Please select
0.26	22.7	Zm.7840.1.A1_at	BM080113	-	-	5e+0	At2g31350	GLX2-5 (GLYOXALASE 2-5)	S.X.	H.G.	Please select
0.15	8.6	Zm.3767.1.S1_at	AY105916.1	-	-	3e-2	At4g27790	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.12	5.9	Zm.605.2.A1_at	AI668174	Plasma membrane integral protein ZmPIP2-1	-	8e-4	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	S.X.	H.G.	Please select
0.10	4.6	Zm.3283.2.A1_a_at	BM335982	hypothetical protein LOC100192072	-	2e+0	At3g46110	unknown protein	S.X.	H.G.	Please select
0.09	4.0	Zm.13931.1.A1_x_at	Z35302.1	-	-	8e-1	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.7	99.9	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.2	99.9	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.6	99.8	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	ZmAffx.259.1.S1_s_at	AI668215	Glycine-rich protein	-	9e-1	At5g40970	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.10811.1.A1_s_at	CK370484	hypothetical protein LOC100192755 /// hypothetical protein LOC100277885 /// glycine-rich protein	-	1e-7	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.10811.7.S1_at	BG837489	Glycine-rich protein	-	7e-3	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.3972.1.A1_at	AI734598	26S protease regulatory subunit S10B	-	2e-33	At5g43010	RPT4A	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.3398.1.A1_at	CF349107	ATGP4	-	5e-1	At3g26980	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.133.1.S1_at	L18924.1	homologue of Arabidopsis gene AGAMOUS	-	5e-8	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.12345.1.A1_a_at	BM416967	mediator complex subunit 10 CG5057-PA	-	2e-3	At1g26665	-	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.12345.1.A1_at	BM416967	mediator complex subunit 10 CG5057-PA	-	2e-3	At1g26665	-	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9942.1.A1_at	CK368883	hypothetical protein LOC100274544	-	8e-2	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At2g20930	816627	-	F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.46095.3.S1_at	CA935945	-	-	8e-17	At3g19770	VPS9A	C.G.	S.X.	Please select
0.04	4e-2	38	Hordeum vulgare	Contig21100_at	Contig21100	-	-	1e+0	At2g36355	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	36	Oryza sativa	Os12g0632000	BI797959	-	Glycine-rich RNA-binding protein GRP1A	8e-1	At5g40970	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.200828.1.S1_x_at	pmrna1617	hypothetical protein	-	4e-14	At3g08500	MYB83 (myb domain protein 83)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	36	Triticum aestivum	TaAffx.82926.1.S1_x_at	CA664790	-	-	3e+0	At4g00330	CRCK2	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1619883_at	CD801259	hypothetical protein LOC100248575	-	8e-1	At4g33690	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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