Gene omics information

Query gene ID	Zm.9264.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.9264.1.A1_at	BM267689	-	-	2e+0	At5g13190	-	S.X.	H.G.	Please select
0.36	41.3	Zm.16498.1.S1_a_at	AY103577.1	hypothetical protein LOC100193260	-	1e-109	At5g55190	RAN3 (RAN GTPASE 3)	S.X.	H.G.	Please select
0.22	16.9	Zm.11469.2.A1_a_at	CF630843	hypothetical protein LOC100279920	-	4e+0	At3g20900	unknown protein	S.X.	H.G.	Please select
0.07	2.9	Zm.8864.1.A1_s_at	BM269430	hypothetical protein LOC100278083	-	6e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please select
0.06	2.3	Zm.1906.1.S1_at	AF239818.1	protein kinase CK2 regulatory subunit CK2B3	-	4e-33	At3g60250	CKB3	S.X.	H.G.	Please select
0.02	0.7	Zm.15894.1.A1_at	BG873874	-	-	3e-14	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.0	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
39.3	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.3	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.3	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.1	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.6	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	7e-10	63	Zm.7068.2.S1_at	CD960009	-	-	3e-2	At1g24120	ARL1 (ARG1-LIKE 1)	C.G.	S.X.	Please select
0.14	6e-4	44	Zm.10249.1.A1_at	BM497740	-	-	1e-1	At2g35460	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.15800.4.A1_at	CK370627	actin-depolymerizing factor 3	-	3e-11	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.15800.4.A1_a_at	CK370627	actin-depolymerizing factor 3	-	3e-11	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.15800.4.A1_x_at	CK370627	actin-depolymerizing factor 3	-	3e-11	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.14283.2.A1_at	CF635325	60S ribosomal protein L19-3	-	1e-42	At1g02780	emb2386 (embryo defective 2386)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.1319.1.S1_at	AW563067	-	-	3e+0	At3g48880	F-box family protein	C.G.	S.X.	Please select
0.03	1e+1	30	ZmAffx.365.1.A1_at	AI673842	-	-	1e+1	At5g39580	peroxidase, putative	C.G.	S.X.	Please select
0.03	1e+1	30	ZmAffx.365.1.S1_at	AI673842	-	-	1e+1	At5g39580	peroxidase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g13190	831158	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	GmaAffx.78593.1.S1_at	BQ610359	-	-	1e+1	At4g17998	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig11203_at	Contig11203	-	-	2e+0	At1g04960	-	C.G.	S.X.	Please select
0.03	2e-7	57	Oryza sativa	Os02g0741100	AK071144.1	-	Heat shock protein DnaJ	2e-8	At1g24120	ARL1 (ARG1-LIKE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	Ptp.7915.1.S1_at	BU894544	-	-	1e+0	At5g56880	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	Ta.21501.1.S1_at	CA694891	-	-	1e-2	At1g21840	UREF (urease accessory protein F)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1619489_s_at	CB918260	-	-	7e-1	At2g24040	hydrophobic protein, putative / low temperature and salt responsive protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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