Gene omics information

Query gene ID	Zm.9251.2.A1_a_at
Gene name	hypothetical protein LOC100194001
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.9251.2.A1_a_at	BM268759	hypothetical protein LOC100194001	-	4e+0	At3g25250	AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.787.1.A1_at	AI759109	EMB1417	-	5e-2	At3g53820	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.22	16.9	Zm.19133.1.S1_at	CO526158	Hypothetical protein LOC100216847	-	3e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	S.X.	H.G.	Please select
0.17	10.6	Zm.19201.2.S1_a_at	CO526388	hypothetical protein LOC100216991	-	2e+0	At5g39650	unknown protein	S.X.	H.G.	Please select
0.06	2.3	Zm.15550.2.A1_at	CA404478	protein phosphatase 2C	-	7e-13	At5g02760	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select
0.06	2.3	ZmAffx.186.1.A1_at	AI668363	hypothetical protein LOC100217123	-	6e-5	At5g19690	STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.7	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.4	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Zm.2924.1.A1_a_at	BM349722	hypothetical protein LOC100216680	-	3e+0	At3g59450	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6963.2.A1_at	CD433950	-	-	1e-15	At5g52410	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4842.1.S1_at	CO532080	hypothetical protein LOC100272296	-	2e-19	At1g68310	vacuolar sorting signal binding	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.403.1.S1_at	AF063865.1	xylanase1	-	1e-2	At4g33840	glycosyl hydrolase family 10 protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4112.1.A1_at	AI834747	hypothetical protein LOC100216927	-	4e+0	At1g35190	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4112.1.S1_at	AY109007.1	Hypothetical protein LOC100216927	-	4e+0	At1g35190	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3121.1.S1_at	AY111018.1	hypothetical protein LOC100277950	-	2e-4	At2g47580	U1A (SPLICEOSOMAL PROTEIN U1A)	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.8588.1.A1_at	CA400423	hypothetical protein LOC100194293	-	9e-1	At5g08560	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.8445.1.S1_at	BM078620	hypothetical protein LOC100193211	-	5e-4	At2g23780	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At3g25250	822119	AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1)	Arabidopsis protein kinase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	Gma.16839.1.A1_at	BU547442	-	-	8e-11	At5g14530	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig5807_s_at	Contig5807	-	-	2e-1	At1g52330	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.24117.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.79585.2.S1_s_at	CV245428	-	-	3e-1	At4g21216	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-2	38	Triticum aestivum	TaAffx.110019.1.S1_at	CA665372	-	-	4e+0	At3g54900	CXIP1 (CAX INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.04	2e-2	38	Vitis vinifera	1614172_at	CF514056	-	-	4e+0	At4g27280	calcium-binding EF hand family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage