Gene omics information

Query gene ID	Zm.9238.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.9238.1.A1_at	CO533275	-	-	5e-2	At2g23320	WRKY15	S.X.	H.G.	Please select
0.71	88.2	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	S.X.	H.G.	Please select
0.55	71.6	Zm.6562.2.A1_a_at	CK347763	plasma membrane associated protein	-	6e+0	At5g56990	-	S.X.	H.G.	Please select
0.44	55.7	Zm.12789.1.A1_at	CA398899	-	-	9e-3	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	S.X.	H.G.	Please select
0.40	48.5	Zm.14407.2.S1_at	AW424519	hypothetical protein LOC100272648	-	3e-140	At1g56070	LOS1	S.X.	H.G.	Please select
0.35	38.9	Zm.5166.1.S1_at	AI612220	-	-	1e+0	At2g19690	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
52.3	100.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.1	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.5	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	6e-9	61	Zm.8245.1.A1_at	BM073406	salt tolerance-like protein	-	9e+0	At5g14030	translocon-associated protein beta (TRAPB) family protein	C.G.	S.X.	Please select
0.05	4e-4	46	Zm.16763.2.S1_a_at	BE051683	hypothetical protein LOC100193074	-	1e-1	At5g41570	WRKY24	C.G.	S.X.	Please select
0.01	1e-3	44	Zm.17583.1.A1_at	AY109441.1	-	-	3e-3	At3g56120	Met-10+ like family protein	C.G.	S.X.	Please select
0.02	1e-3	44	Zm.17583.1.S1_at	AY109441.1	-	-	3e-3	At3g56120	Met-10+ like family protein	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.837.1.A1_at	BG320171	hypothetical protein LOC100272396	-	1e-40	At4g21660	proline-rich spliceosome-associated (PSP) family protein	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.354.2.S1_a_at	U37428.1	glossy1	-	5e-2	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.354.1.S1_at	AY505017.1	glossy1	-	7e-2	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.354.2.S1_at	U37428.1	glossy1	-	5e-2	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.3471.1.A1_at	AI973315	glycerol-3-phosphate dehydrogenase	-	6e-11	At5g40610	glycerol-3-phosphate dehydrogenase (NAD+) / GPDH	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-2	40	Arabidopsis thaliana	At2g23320	816864	WRKY15	Encodes WRKY DNA-binding protein 15 (WRKY15).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-9	65	Glycine max	Gma.17860.1.S1_at	BU546053	-	-	6e-10	At1g75540	STH2 (SALT TOLERANCE HOMOLOG2)	C.G.	S.X.	Please select
0.02	1e-1	38	Hordeum vulgare	HF24B12r_at	HF24B12r	-	-	4e+0	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	C.G.	S.X.	Please select
0.29	3e-51	204	Oryza sativa	Os04g0540200	AK061333.1	-	Zn-finger, CONSTANS type domain containing protein	2e-1	At2g30505	Expressed protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	PtpAffx.214141.1.S1_at	pmrna27514	hypothetical protein	-	5e-3	At2g22080	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	7e-14	79	Triticum aestivum	TaAffx.111691.1.S1_s_at	CA631737	-	-	1e+0	At3g47430	PEX11B	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1620915_at	CF511488	-	-	2e-1	At2g17740	DC1 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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