Gene omics information

Query gene ID	Zm.9237.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	S.X.	H.G.	Please select
0.63	81.1	Zm.9238.1.A1_at	CO533275	-	-	5e-2	At2g23320	WRKY15	S.X.	H.G.	Please select
0.55	71.6	Zm.6562.2.A1_a_at	CK347763	plasma membrane associated protein	-	6e+0	At5g56990	-	S.X.	H.G.	Please select
0.44	55.7	Zm.12789.1.A1_at	CA398899	-	-	9e-3	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	S.X.	H.G.	Please select
0.40	48.5	Zm.14407.2.S1_at	AW424519	hypothetical protein LOC100272648	-	3e-140	At1g56070	LOS1	S.X.	H.G.	Please select
0.35	38.9	Zm.5166.1.S1_at	AI612220	-	-	1e+0	At2g19690	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.9	100.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
46.3	100.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.1	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.7	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Zm.1861.1.S1_at	CF009566	-	-	2e+0	At5g45040	cytochrome c6 (ATC6)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9290.1.A1_at	AY108360.1	hypothetical protein LOC100192546	-	7e-1	At5g58260	-	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.697.1.A1_a_at	AB102957.1	histidine kinase 3	-	1e-17	At5g35750	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.1377.1.A1_at	BG873710	hypothetical protein LOC100275345	-	2e+0	At2g46460	nucleic acid binding	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12663.1.S1_at	BQ703906	hypothetical protein LOC100279518	-	3e-2	At5g46720	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.12000.1.A1_at	BM382537	-	-	1e+1	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.9563.1.A1_at	AY072297.1	flavonoid 3-monooxygenase	-	3e+0	At4g16410	unknown protein	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.9186.1.A1_at	CB334436	hypothetical protein LOC100278549	-	3e+0	At3g55605	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.8052.2.A1_at	BM348133	-	-	1e-1	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	36	Arabidopsis thaliana	At3g07750	819966	3' exoribonuclease family domain 1-containing protein	F:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;MOFAPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	HgAffx.11568.1.S1_at	CB934882	-	-	5e+0	At5g59845	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HV_CEa0013H09r2_at	HV_CEa0013H09r2	-	-	2e-1	At5g62120	ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23)	C.G.	S.X.	Please select
0.02	7e-1	36	Oryza sativa	Os11g0160400	AK109030.1	-	Hypothetical protein	4e-2	At3g53650	histone H2B, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.30432.1.A1_at	CV276128	-	-	1e+0	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	TaAffx.52477.1.S1_at	CA706866	-	-	2e+0	At5g62820	integral membrane protein, putative	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1606921_at	CB979343	-	-	1e+0	At2g07340	prefoldin-related KE2 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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