Gene omics information

Query gene ID	Zm.9236.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.9236.1.A1_at	BM339258	-	-	8e-2	At3g01860	unknown protein	S.X.	H.G.	Please select
0.77	92.1	Zm.4406.1.A1_at	AI834053	splicing factor, arginine/serine-rich 12	-	2e+0	At2g26695	binding / zinc ion binding	S.X.	H.G.	Please select
0.73	89.9	Zm.17166.1.A1_at	CK370745	-	-	4e+0	At5g65730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	S.X.	H.G.	Please select
0.55	71.6	Zm.1934.1.S1_s_at	AW519956	hypothetical protein LOC100216744 /// glycerophosphodiester phosphodiesterase	-	3e+0	At1g62770	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	S.X.	H.G.	Please select
0.43	52.8	Zm.5362.1.A1_at	AW498436	hypothetical protein LOC100193109	-	1e-1	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.3	99.5	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-9	61	Zm.13583.1.S1_at	AY108161.1	-	-	5e-1	At2g13980	nucleic acid binding	C.G.	S.X.	Please select
0.03	8e-3	40	Zm.3843.1.S1_at	AW054469	hypothetical protein LOC100216880	-	2e+0	At4g19720	glycosyl hydrolase family 18 protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.9509.1.A1_at	BM332884	hypothetical protein LOC100279466	-	1e+0	At1g77770	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.13241.1.S1_at	AY059647.1	alternative oxidase AOX2 precursor	-	1e-8	At3g22370	AOX1A (ALTERNATIVE OXIDASE 1A)	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.3902.1.A1_at	AW062054	-	-	1e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.3902.1.S1_at	AY106289.1	-	-	1e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.760.1.A1_at	AI734521	-	-	1e+1	At5g42591	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9418.1.S1_at	AF493799.1	DREB-like protein	-	4e-2	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9028.1.A1_at	CF972398	hypothetical protein LOC100193938 /// hypothetical protein LOC100278288	-	6e+0	At5g53680	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-2	38	Arabidopsis thaliana	At3g01860	820070	unknown protein	F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	GmaAffx.64309.2.S1_at	AW309050	-	-	4e-43	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	rbaal24m19_at	rbaal24m19	-	-	5e-1	At4g36600	-	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	OsAffx.13493.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.146498.1.A1_at	CV274887	-	-	2e-1	At5g59240	40S ribosomal protein S8 (RPS8B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	5e-105	381	Triticum aestivum	TaAffx.30804.1.S1_at	CA621909	-	-	6e-2	At3g01860	unknown protein	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1607698_at	CF210311	hypothetical protein LOC100261123	-	1e-1	At2g45380	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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