Gene omics information

Query gene ID	Zm.9194.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.9194.1.A1_at	BM267243	-	-	1e+0	At3g03456	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.1994.1.S1_at	CD442162	hypothetical protein LOC100193300	-	6e+0	At5g63070	40S ribosomal protein S15, putative	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.1067.1.S1_at	AI901309	-	-	1e+0	At4g05220	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	S.X.	H.G.	Please select
0.43	52.8	Zm.6439.2.A1_at	AI881500	eucaryotic initiation factor7	-	7e-14	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please select
0.26	22.7	Zm.16892.2.A1_at	CA403833	-	-	3e-6	At3g09710	IQD1 (IQ-DOMAIN 1)	S.X.	H.G.	Please select
0.15	8.6	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.2	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	36	Zm.3895.1.A1_at	BM079254	hypothetical protein LOC100272890	-	1e-30	At3g50820	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.3767.1.A1_at	AY105916.1	hypothetical protein LOC100274210	-	3e-2	At4g27790	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.3767.1.S1_at	AY105916.1	-	-	3e-2	At4g27790	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.7847.1.A1_at	BM080149	-	-	1e+0	At3g27416	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.4056.1.A1_at	CA403994	hypothetical protein LOC100192464	-	3e+0	At4g01080	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.18297.1.S1_at	BG320462	hypothetical protein LOC100216767	-	1e-27	At3g54050	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.90.1.A1_a_at	AF004210.1	-	-	4e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8618.1.A1_at	BM336706	-	-	1e-10	At3g15352	ATCOX17	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.5873.1.S1_at	AI782954	hypothetical protein LOC100216831	-	5e-1	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At3g03456	6240959	unknown protein	F:unknown;P:unknown;C:endomembrane system	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-18	93	Glycine max	Gma.17711.1.S1_at	CD394545	-	-	1e-7	At2g01290	ribose-5-phosphate isomerase	C.G.	S.X.	Please select
0.39	2e-59	228	Hordeum vulgare	Contig7835_at	Contig7835	-	-	6e-7	At2g01290	ribose-5-phosphate isomerase	C.G.	S.X.	Please select
0.30	2e-44	180	Oryza sativa	Os04g0306400	AK103443.1	-	Ribose 5-phosphate isomerase family protein	4e-8	At2g01290	ribose-5-phosphate isomerase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.59240.2.A1_at	DN490904	-	-	4e+0	At5g20740	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	2e-58	226	Triticum aestivum	Ta.5393.1.S1_at	CD939412	-	-	6e-7	At2g01290	ribose-5-phosphate isomerase	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1620022_at	CF413848	-	-	1e+1	At4g01995	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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