Gene omics information

Query gene ID	Zm.9120.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.9120.1.A1_at	BM348766	-	-	9e-2	At3g25572	CPuORF11 (Conserved peptide upstream open reading frame 11)	S.X.	H.G.	Please select
0.55	71.6	Zm.9119.1.A1_at	BM350713	-	-	6e+0	At5g44570	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.16645.1.S1_at	CF648747	hypothetical protein LOC100191852	-	1e-11	At1g56720	protein kinase family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.18987.1.A1_at	CF631662	-	-	3e+0	At5g51120	PABN1 (POLYADENYLATE-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.10312.1.A1_at	AF348415.2	cytosolic aldehyde dehydrogenase RF2D	-	4e-9	At3g24503	ALDH2C4	S.X.	H.G.	Please select
0.29	28.1	Zm.3522.1.S1_at	BG265505	-	-	1e-19	At4g00740	dehydration-responsive protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.3	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Zm.2019.1.A1_at	BG842500	hypothetical protein LOC100273860	-	2e-6	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9464.1.A1_at	CF972371	hypothetical protein LOC100272725	-	1e-1	At4g14385	-	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3602.1.A1_at	BG873973	-	-	6e-1	At1g18490	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.17222.1.A1_at	CK144311	-	-	2e-13	At3g62980	TIR1 (TRANSPORT INHIBITOR RESPONSE 1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.15663.1.S1_at	CD437366	alpha-6-galactosyltransferase	-	7e-4	At4g37690	galactosyl transferase GMA12/MNN10 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12030.1.A1_at	CF623978	-	-	2e+0	At2g33700	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.968.1.S1_at	AI833843	-	-	2e+0	At5g67110	ALC (ALCATRAZ)	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.9633.1.S1_at	BM380839	-	-	2e+1	At5g55507	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.9097.1.A1_at	BM266610	-	-	1e+0	At2g17640	ATSERAT3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-2	38	Arabidopsis thaliana	At3g25572	6241080	CPuORF11 (Conserved peptide upstream open reading frame 11)	Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF11 represents a conserved upstream opening reading frame relative to major ORF AT3G25570.1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	GmaAffx.51874.1.S1_at	BU926579	-	-	9e+0	At1g07420	SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1)	C.G.	S.X.	Please select
0.03	7e-1	34	Hordeum vulgare	rbaal18p14_at	rbaal18p14	-	-	6e-1	At2g04920	F-box family protein (FBX9)	C.G.	S.X.	Please select
0.03	7e-1	36	Oryza sativa	Os10g0103600	9638.m00039	-	-	2e-1	At1g34065	SAMC2 (S-adenosylmethionine carrier 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.32955.1.A1_at	CK094441	-	-	8e-1	At3g22845	emp24/gp25L/p24 protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-1	36	Triticum aestivum	TaAffx.52783.1.S1_at	CA701369	-	-	7e+0	At5g60870	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1610860_at	CB972633	-	-	2e+0	At3g49550	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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