Gene omics information

Query gene ID	Zm.9117.1.A1_at
Gene name	hypothetical protein LOC100274722
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.62	79.8	Zm.9117.1.A1_at	CF636944	hypothetical protein LOC100274722	-	4e-1	At1g71865	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.10148.1.A1_at	BM382070	-	-	3e-1	At4g18620	-	S.X.	H.G.	Please select
0.55	71.6	Zm.9335.1.A1_at	BM268136	hypothetical protein LOC100273605	-	2e-2	At2g40580	protein kinase family protein	S.X.	H.G.	Please select
0.54	69.8	ZmAffx.188.1.S1_at	AI668391	Hypothetical protein LOC100216777	-	3e-6	At1g13690	ATE1	S.X.	H.G.	Please select
0.54	69.8	ZmAffx.1199.1.S1_at	BE057023	-	-	5e-2	At3g48610	phosphoesterase family protein	S.X.	H.G.	Please select
0.54	69.8	ZmAffx.932.1.A1_at	AI795506	-	-	3e+0	At5g22430	unknown protein	S.X.	H.G.	Please select
0.52	67.3	Zm.10557.1.A1_a_at	CK347884	hypothetical protein LOC100280344 /// agmatine deiminase	-	6e-6	At5g08170	EMB1873 (EMBRYO DEFECTIVE 1873)	S.X.	H.G.	Please select
0.52	67.3	Zm.6751.1.A1_at	BG873976	hypothetical protein LOC100274772	-	4e-5	At3g62580	-	S.X.	H.G.	Please select
0.50	65.7	Zm.14497.11.S1_at	BQ619270	-	-	3e-8	At5g59910	HTB4	S.X.	H.G.	Please select
0.42	51.3	Zm.13846.1.S1_at	AY103949.1	-	-	6e-1	At5g07600	oleosin / glycine-rich protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.5	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.5	96.3	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.8	95.5	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.4	94.9	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.1	94.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	7e-1	34	Zm.7.1.S1_at	AW787278	glyceraldehyde-3-phosphate dehydrogenase1	-	3e-9	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.10384.1.A1_at	CA404301	hypothetical protein LOC100191877	-	1e-15	At2g19940	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.421.1.A1_at	AI676853	-	-	3e+0	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.421.1.S1_at	AI676853	-	-	3e+0	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6008.1.S1_at	CA401170	hypothetical protein LOC100216743	-	4e-2	At5g56600	PRF3 (PROFILIN 3)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.430.1.S1_at	AF099111.1	sigma-like factor2B	-	4e+0	At5g04820	OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)	C.G.	S.X.	Please select
0.02	1e+1	30	ZmAffx.886.1.A1_at	AI770831	-	-	8e-1	At5g22220	-	C.G.	S.X.	Please select
0.02	1e+1	30	ZmAffx.886.1.S1_at	AI770831	-	-	8e-1	At5g22220	-	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.9723.1.A1_at	BI992830	hypothetical protein LOC100194108	-	1e-1	At1g40087	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	4e-1	36	Arabidopsis thaliana	At1g71865	843517	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	PsAffx.CL213Contig1_at	PsAffx.CL213Contig1	-	-	9e-1	At5g14910	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.30	1e-58	226	Hordeum vulgare	Contig12315_at	Contig12315	-	-	7e-3	At1g71865	unknown protein	C.G.	S.X.	Please select
0.23	5e-27	123	Oryza sativa	Os.13923.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e+0	32	Populus trichocarpa	PtpAffx.22598.2.A1_a_at	CV248741	hypothetical protein	-	5e-6	At1g71865	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	1e-44	180	Triticum aestivum	TaAffx.2799.1.S1_at	CA606342	-	-	1e+0	At3g45820	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1611985_at	CF404643	hypothetical protein LOC100267021	-	2e-26	At5g15880	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage