Gene omics information

Query gene ID	Zm.9102.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.9102.1.A1_at	BM333481	-	-	2e-2	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	S.X.	H.G.	Please select
0.77	92.1	Zm.3925.1.A1_at	CF045284	hypothetical protein LOC100273553	-	4e-8	At1g31930	XLG3 (extra-large GTP-binding protein 3)	S.X.	H.G.	Please select
0.56	74.4	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	S.X.	H.G.	Please select
0.55	71.6	Zm.8314.1.A1_at	BM953578	hypothetical protein LOC100277461	-	6e+0	At2g38640	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.6645.1.S1_at	CF637989	NADH ubiquinone oxidoreductase B22-like subunit	-	2e+0	At2g40810	AtATG18c	S.X.	H.G.	Please select
0.29	28.1	Zm.19350.1.A1_at	CO531475	yip1 domain family member 6	-	2e-18	At4g30260	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.23	18.6	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.5	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-15	81	Zm.8822.1.A1_at	AY105347.1	glycerol-3-phosphate acyltransferase 8	-	3e-19	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.17004.1.A1_at	CK826781	-	-	5e+0	At4g14800	PBD2 (20S PROTEASOME BETA SUBUNIT 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4441.1.A1_at	AW066817	-	-	1e-1	At4g05340	ATP binding	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.18661.1.A1_at	CO521708	-	-	3e+0	At2g26660	SPX2 (SPX DOMAIN GENE 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17597.2.A1_s_at	CK347323	ATP synthase3 /// hypothetical protein LOC100191627 /// ATP synthase delta chain	-	8e+0	At5g47030	ATP synthase delta' chain, mitochondrial	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.14041.1.A1_at	AY104522.1	-	-	1e+1	At4g19760	catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.14041.1.S1_at	AY104522.1	-	-	1e+1	At4g19760	catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.13605.1.S1_at	CO522133	serine--glyoxylate aminotransferase	-	1e-14	At2g13360	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12382.1.S1_at	BU097491	-	-	1e+0	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Arabidopsis thaliana	At2g38110	818389	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	Encodes a protein with glycerol-3-phosphate acyltransferase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	34	Glycine max	PsAffx.psMA008xM23f_s_at	PsAffx.psMA008xM23f	-	-	3e+0	At1g02160	-	C.G.	S.X.	Please select
0.17	7e-10	63	Hordeum vulgare	Contig19601_at	Contig19601	-	-	5e+0	At5g01225	unknown protein	C.G.	S.X.	Please select
0.32	3e-157	555	Oryza sativa	Os01g0631400	AK100804.1	-	Conserved hypothetical protein	2e-1	Atmg00260	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e+0	32	Populus trichocarpa	PtpAffx.31547.1.A1_at	CV231078	-	-	8e-1	At1g48270	GCR1 (G-PROTEIN-COUPLED RECEPTOR 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	2e-8	59	Triticum aestivum	Ta.17342.1.S1_at	CD454266	-	-	5e+0	At5g01225	unknown protein	C.G.	S.X.	Please select
0.08	1e-16	85	Vitis vinifera	1612479_at	CF415448	hypothetical protein LOC100243093	-	1e-8	At1g01610	GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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