Gene omics information

Query gene ID Zm.9089.1.A1_at
Gene name
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5369.1Zm.9089.1.A1_atBM332138--5e+0At5g39340AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3)S.X.H.G.
0.6381.1Zm.15919.1.S1_atAY105419.1--2e+0At5g25290F-box family proteinS.X.H.G.
0.147.7Zm.19019.1.A1_atBM080703hypothetical protein LOC100276837-2e+0At5g54850unknown proteinS.X.H.G.
0.136.8Zm.4189.1.S1_atBM378985Pyruvate Pi dikinase regulatory protein-5e-2At3g01200AtRP2 (PPDK regulatory protein 2)S.X.H.G.
0.094.0Zm.7058.3.S1_x_atAY103767.1ypt homolog2-4e-76At5g47200ATRAB1AS.X.H.G.
0.041.5Zm.7663.1.A1_atBQ486953--2e+0At4g30230unknown proteinS.X.H.G.
0.031.1Zm.13870.2.S1_s_atAF099435.1R2R3MYB-domain protein-2e-5At5g40330MYB23 (MYB DOMAIN PROTEIN 23)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
26.599.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.199.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.999.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.499.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.899.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.899.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.999.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.499.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.199.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.997.7GSM320470protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.016e-134Zm.3157.3.A1_atCK347593elongation factor 1-alpha-0At1g07930elongation factor 1-alpha / EF-1-alphaC.G.S.X.
0.016e-134Zm.14419.1.A1_s_atU76259.1elongation factor 1-alpha-0At1g07940elongation factor 1-alpha / EF-1-alphaC.G.S.X.
0.032e+032Zm.6127.1.A1_a_atAY110233.126S proteasome non-ATPase regulatory subunit 10-1e-9At2g03430ankyrin repeat family proteinC.G.S.X.
0.032e+032Zm.6127.1.S1_atAY110233.1--1e-9At2g03430ankyrin repeat family proteinC.G.S.X.
0.012e+032Zm.4142.1.A1_atAI855154--3e+0At5g46780VQ motif-containing proteinC.G.S.X.
0.029e+030Zm.9124.2.S1_atBM340636--5e-1At5g32470-C.G.S.X.
0.019e+030Zm.6892.1.A1_atAY108160.1hypothetical protein LOC100216704-7e-20At5g22060ATJ2C.G.S.X.
0.029e+030Zm.5777.1.A1_atAI649584hypothetical protein LOC100273681-7e+0At4g30660hydrophobic protein, putative / low temperature and salt responsive protein, putativeC.G.S.X.
0.019e+030Zm.521.1.S1_atAF200530.1cellulose synthase6-1e-20At2g21770CESA9 (CELLULOSE SYNTHASE A9)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e+032Arabidopsis thalianaAt5g39340833930AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3)Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).---C.G.S.X.
0.035e-136Glycine maxGmaAffx.64879.1.S1_atBQ080234--5e-2At3g23930unknown proteinC.G.S.X.
0.031e+130Hordeum vulgareEBro08_SQ007_H08_atEBro08_SQ007_H08--9e-1At5g40220AGL43 (AGAMOUS-LIKE 43)C.G.S.X.
0.132e-35151Oryza sativaOs12g0152800AK072885.1-Dual specificity protein phosphatase familyprotein4e-1At1g68640PAN (PERIANTHIA)C.G.S.X.
0.038e+032Populus trichocarpaPtpAffx.89023.2.S1_atBU874983--3e-1At1g75060unknown proteinC.G.S.X.
0.222e-21103Triticum aestivumTa.5584.1.S1_atBJ243886--3e+0At4g21850methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinC.G.S.X.
0.033e-238Vitis vinifera1614177_atBQ799726hypothetical protein LOC100261330-1e+0At1g72290trypsin and protease inhibitor family protein / Kunitz family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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