Gene omics information

Query gene ID	Zm.9089.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.9089.1.A1_at	BM332138	-	-	5e+0	At5g39340	AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3)	S.X.	H.G.	Please select
0.63	81.1	Zm.15919.1.S1_at	AY105419.1	-	-	2e+0	At5g25290	F-box family protein	S.X.	H.G.	Please select
0.14	7.7	Zm.19019.1.A1_at	BM080703	hypothetical protein LOC100276837	-	2e+0	At5g54850	unknown protein	S.X.	H.G.	Please select
0.13	6.8	Zm.4189.1.S1_at	BM378985	Pyruvate Pi dikinase regulatory protein	-	5e-2	At3g01200	AtRP2 (PPDK regulatory protein 2)	S.X.	H.G.	Please select
0.09	4.0	Zm.7058.3.S1_x_at	AY103767.1	ypt homolog2	-	4e-76	At5g47200	ATRAB1A	S.X.	H.G.	Please select
0.04	1.5	Zm.7663.1.A1_at	BQ486953	-	-	2e+0	At4g30230	unknown protein	S.X.	H.G.	Please select
0.03	1.1	Zm.13870.2.S1_s_at	AF099435.1	R2R3MYB-domain protein	-	2e-5	At5g40330	MYB23 (MYB DOMAIN PROTEIN 23)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.5	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-1	34	Zm.3157.3.A1_at	CK347593	elongation factor 1-alpha	-	0	At1g07930	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.14419.1.A1_s_at	U76259.1	elongation factor 1-alpha	-	0	At1g07940	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.6127.1.A1_a_at	AY110233.1	26S proteasome non-ATPase regulatory subunit 10	-	1e-9	At2g03430	ankyrin repeat family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.6127.1.S1_at	AY110233.1	-	-	1e-9	At2g03430	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4142.1.A1_at	AI855154	-	-	3e+0	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.9124.2.S1_at	BM340636	-	-	5e-1	At5g32470	-	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.6892.1.A1_at	AY108160.1	hypothetical protein LOC100216704	-	7e-20	At5g22060	ATJ2	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.5777.1.A1_at	AI649584	hypothetical protein LOC100273681	-	7e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.521.1.S1_at	AF200530.1	cellulose synthase6	-	1e-20	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g39340	833930	AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3)	Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.64879.1.S1_at	BQ080234	-	-	5e-2	At3g23930	unknown protein	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	EBro08_SQ007_H08_at	EBro08_SQ007_H08	-	-	9e-1	At5g40220	AGL43 (AGAMOUS-LIKE 43)	C.G.	S.X.	Please select
0.13	2e-35	151	Oryza sativa	Os12g0152800	AK072885.1	-	Dual specificity protein phosphatase familyprotein	4e-1	At1g68640	PAN (PERIANTHIA)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e+0	32	Populus trichocarpa	PtpAffx.89023.2.S1_at	BU874983	-	-	3e-1	At1g75060	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	2e-21	103	Triticum aestivum	Ta.5584.1.S1_at	BJ243886	-	-	3e+0	At4g21850	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	C.G.	S.X.	Please select
0.03	3e-2	38	Vitis vinifera	1614177_at	BQ799726	hypothetical protein LOC100261330	-	1e+0	At1g72290	trypsin and protease inhibitor family protein / Kunitz family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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