Gene omics information

Query gene ID	Zm.9088.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.9088.1.A1_at	CB350848	-	-	1e+0	At2g06908	unknown protein	S.X.	H.G.	Please select
0.83	95.6	Zm.8383.1.A1_at	BM078678	PCO062666 protein	-	4e-1	At5g47960	ATRABA4C	S.X.	H.G.	Please select
0.83	95.6	Zm.12152.1.S1_at	CK394699	hypothetical protein LOC100274505	-	1e-5	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	S.X.	H.G.	Please select
0.83	95.6	Zm.15448.1.S1_at	CD448349	plastidic phosphate translocator-like protein1	-	4e-24	At4g32390	phosphate translocator-related	S.X.	H.G.	Please select
0.73	89.9	Zm.15780.1.A1_at	CD484576	-	-	4e+0	At3g01472	CPuORF33 (Conserved peptide upstream open reading frame 33)	S.X.	H.G.	Please select
0.60	77.8	Zm.16892.1.A1_at	CO520304	calmodulin binding protein	-	2e-2	At3g22190	IQD5 (IQ-domain 5)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.7	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.8	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.1	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	3e-5	48	Zm.2259.1.A1_at	AW330810	-	-	1e+1	At5g09270	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.6117.1.A1_at	BM074413	hypothetical protein LOC100273699	-	1e-1	At5g02820	RHL2 (ROOT HAIRLESS 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6045.5.A1_at	CK347500	-	-	2e-48	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.928.1.A1_at	AI795442	-	-	8e-1	At5g24270	SOS3 (SALT OVERLY SENSITIVE 3)	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.928.1.S1_at	AI795442	-	-	8e-1	At5g24270	SOS3 (SALT OVERLY SENSITIVE 3)	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.5726.1.A1_at	BM072874	hypothetical protein LOC100191332	-	2e-4	At4g28830	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.5679.1.S1_at	CD437138	hypothetical protein LOC100216885	-	3e-3	At2g43950	OEP37	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.5070.1.A1_at	AY108736.1	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.5070.1.S1_at	AY108736.1	Hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At2g06908	815257	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	GmaAffx.43969.1.S1_at	AW570533	-	-	1e+0	At3g29075	glycine-rich protein	C.G.	S.X.	Please select
0.04	8e+0	30	Hordeum vulgare	HVSMEb0007H18r2_at	HVSMEb0007H18r2	-	-	6e+0	At5g60220	TET4 (TETRASPANIN4)	C.G.	S.X.	Please select
0.03	8e+0	32	Oryza sativa	Os.9581.1.S1_a_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.85773.1.S1_at	CK107579	white-brown-complex ABC transporter family	-	6e-17	At1g53390	ATPase, coupled to transmembrane movement of substances	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.111824.1.S1_at	CA632670	-	-	4e+0	At4g00585	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1606980_at	CF211606	hypothetical protein LOC100246874	-	4e+0	At5g46025	Ras-related GTP-binding family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage