Gene omics information

Query gene ID	Zm.9079.1.A1_at
Gene name	hypothetical protein LOC100217287
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.9079.1.A1_at	CN844993	hypothetical protein LOC100217287	-	6e-3	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	S.X.	H.G.	Please select
0.59	76.1	Zm.13345.2.A1_x_at	CD435730	hypothetical protein LOC100279020	-	2e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.18974.1.A1_at	BQ539399	hypothetical protein LOC100272472	-	3e-1	At1g17147	-	S.X.	H.G.	Please select
0.46	58.4	Zm.5884.1.A1_at	BM340350	hypothetical protein LOC100192097	-	8e-2	At2g35880	-	S.X.	H.G.	Please select
0.44	55.7	Zm.12384.1.A1_at	AY111304.1	-	-	5e-4	At3g23340	ckl10 (Casein Kinase I-like 10)	S.X.	H.G.	Please select
0.43	52.8	Zm.14759.1.S1_at	CB280800	hypothetical protein LOC100191677	-	4e-2	At5g46640	DNA-binding family protein	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.1427.1.S1_at	11990232-12	-	-	5e-170	Atcg00190	-	S.X.	H.G.	Please select
0.31	31.6	Zm.1247.1.S1_at	BE575051	EARLY flowering 4 protein	-	4e+0	At3g17570	F-box family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.13551.1.A1_at	AY108205.1	-	-	2e+0	At2g33870	ArRABA1h (Arabidopsis Rab GTPase homolog A1h)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.8	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-1	36	Zm.3820.1.S1_at	AW438235	-	-	4e+0	At2g19740	60S ribosomal protein L31 (RPL31A)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.825.1.A1_at	CF631812	bolA-like protein	-	2e+0	At5g09830	BolA-like family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.6138.1.A1_at	CF062392	-	-	1e-1	At5g04910	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5488.1.S1_at	CF623713	hypothetical protein LOC100276754	-	1e-1	At1g64490	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5213.1.A1_at	CF035372	protein binding protein	-	2e-4	At5g08139	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.3715.2.A1_a_at	AY103872.1	hypothetical protein LOC100273717 /// spliceosome RNA helicase BAT1	-	9e-152	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.19316.1.A1_at	CO523375	-	-	1e+0	At3g05860	MADS-box protein (AGL45)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.1368.1.A1_at	CA399867	calcineurin B-like protein 3	-	3e-40	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.1093.1.A1_at	BG842386	-	-	5e-4	At1g48410	AGO1 (ARGONAUTE 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	6e-3	42	Arabidopsis thaliana	At1g13890	837948	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e-4	46	Glycine max	Gma.5170.1.A1_at	BQ628737	-	-	5e-9	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please select
0.39	2e-66	252	Hordeum vulgare	Contig12026_at	Contig12026	-	-	3e-2	At4g32714	SCRL25 (SCR-Like 25)	C.G.	S.X.	Please select
0.23	7e-23	109	Oryza sativa	Os02g0437200	AK065640.1	-	SNAP-34	1e+0	At1g68760	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-3	44	Populus trichocarpa	PtpAffx.29726.1.A1_s_at	CV249620	hypothetical protein	-	1e-28	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	2e-83	309	Triticum aestivum	TaAffx.30729.1.S1_at	CA622593	-	-	1e+0	At4g32714	SCRL25 (SCR-Like 25)	C.G.	S.X.	Please select
0.04	7e+0	30	Vitis vinifera	1622144_at	CF206753.1	-	-	7e+0	At4g02465	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage