Gene omics information

Query gene ID	Zm.9068.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.9068.1.A1_at	BM337511	-	-	1e+0	At4g21620	glycine-rich protein	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.80.1.S1_at	AI665268	-	-	3e+0	At2g07721	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.4106.1.S1_at	BQ048471	-	-	1e+1	At4g29035	-	S.X.	H.G.	Please select
0.29	28.1	ZmAffx.880.1.S1_at	AI770800	protein kinase-like	-	3e+0	At3g17100	transcription factor	S.X.	H.G.	Please select
0.26	22.7	Zm.15554.1.A1_at	CF633136	serine/threonine-protein phosphatase 5	-	1e-40	At2g42810	PP5.2 (PROTEIN PHOSPHATASE 5.2)	S.X.	H.G.	Please select
0.25	21.3	Zm.14539.1.A1_at	AY108777.1	R2R3MYB-domain protein	-	7e-8	At3g12720	ATMYB67 (MYB DOMAIN PROTEIN 67)	S.X.	H.G.	Please select
0.20	14.2	Zm.3919.1.S1_at	BG840867	hypothetical protein LOC100194180	-	7e-16	At3g05280	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.08	3.4	Zm.15352.3.S1_at	CF919882	hypothetical protein LOC100273764	-	5e-11	At3g12170	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.2	100.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
43.0	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.4	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.5	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-14	77	Zm.667.1.A1_at	AF332171.1	alpha-expansin 3	-	1e-7	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	C.G.	S.X.	Please select
0.06	6e-10	63	Zm.665.1.S1_at	AF332169.1	alpha expansin1	-	7e-13	At2g37640	EXP3	C.G.	S.X.	Please select
0.04	4e-8	57	Zm.14498.1.A1_at	AF332170.1	alpha expansin2	-	3e-15	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.06	2e-7	56	Zm.669.1.S1_at	AF332173.1	alpha-expansin 5	-	8e-4	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.04	6e-4	44	Zm.14498.2.A1_at	AI691791	-	-	2e-4	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please select
0.06	6e-4	44	Zm.13728.2.S1_at	AY106266.1	-	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.06	6e-4	44	Zm.13728.2.S1_a_at	AY106266.1	alpha-expansin 4	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.07	1e-1	36	Zm.13728.1.S1_at	AF332172.1	alpha-expansin 4	-	2e-19	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.01	6e-1	34	ZmAffx.5.1.S1_at	AY372246.1	cellulose synthase catalytic subunit 12	-	4e-26	At5g17420	IRX3 (IRREGULAR XYLEM 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At4g21620	828249	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	GmaAffx.75796.1.S1_at	AW508489	-	-	3e-3	At4g21720	unknown protein	C.G.	S.X.	Please select
0.14	7e-7	54	Hordeum vulgare	HVSMEl0024B06r2_at	HVSMEl0024B06r2	-	-	4e-6	At4g01630	ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)	C.G.	S.X.	Please select
0.43	5e-57	222	Oryza sativa	Os10g0439200	9638.m02604	-	Alpha-expansin OsEXPA25	1e-4	At2g37640	EXP3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-1	38	Populus trichocarpa	PtpAffx.202325.1.S1_at	pmrna4655	hypothetical protein	-	6e-15	At4g01630	ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	1e-16	87	Triticum aestivum	TaAffx.86321.1.S1_at	CA611186	-	-	3e+0	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1616308_at	CF207045.1	-	-	7e-2	At1g56200	emb1303 (embryo defective 1303)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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