Gene omics information

Query gene ID	Zm.9048.2.A1_at
Gene name	nudix hydrolase 4
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.9048.2.A1_at	BG321152	nudix hydrolase 4	-	5e-1	At1g13420	ST4B (SULFOTRANSFERASE 4B)	S.X.	H.G.	Please select
0.60	77.8	Zm.3456.1.A1_at	CF629528	N-acetyltransferase	-	1e-5	At2g39000	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.11557.1.S1_at	CF016411	hypothetical protein LOC100275482	-	5e-1	At5g04440	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.13006.1.S1_at	CA403196	-	-	2e-2	At3g22620	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.21	15.5	Zm.18248.1.A1_at	CN844167	solute carrier family 2, facilitated glucose transporter member 8	-	1e-1	At3g05160	sugar transporter, putative	S.X.	H.G.	Please select
0.04	1.5	Zm.18639.1.A1_at	CF631246	hypothetical protein LOC100193415	-	2e-1	At3g16490	IQD26 (IQ-domain 26)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.6	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	3e-68	258	Zm.9048.1.A1_x_at	CF024226	hypothetical protein LOC100193744	-	2e+1	At5g35740	glycosyl hydrolase family protein 17	C.G.	S.X.	Please select
0.35	3e-68	258	Zm.9048.1.A1_at	CF024226	hypothetical protein LOC100193744	-	2e+1	At5g35740	glycosyl hydrolase family protein 17	C.G.	S.X.	Please select
0.06	1e-2	40	Zm.3263.1.A1_at	BG842806	nudix hydrolase 13	-	2e+0	At3g52525	OFP6 (OVATE FAMILY PROTEIN 6)	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.445.1.S1_at	AF329371.1	Lipoxygenase	-	6e-3	At3g22400	LOX5	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.2876.1.A1_at	AW256253	-	-	5e-1	At1g09860	ATPUP16	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.10843.1.A1_at	AY100479.1	histone acetyltransferase complex component	-	8e-8	At4g16420	ADA2B (HOMOLOG OF YEAST ADA2 2B)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.9351.1.A1_a_at	CF630860	transport protein particle component, Bet3 containing protein /// transport protein particle component, Bet3 containing protein /// transport protein particle component, Bet3 containing protein	-	4e-20	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.9351.1.A1_at	CF630860	transport protein particle component, Bet3 containing protein	-	4e-20	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.7951.1.S1_at	AY105197.1	hypothetical protein LOC100272269	-	1e-2	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At1g13420	837902	ST4B (SULFOTRANSFERASE 4B)	Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	GmaAffx.84570.1.S1_at	BM308564	-	-	8e-26	At4g39520	GTP-binding protein, putative	C.G.	S.X.	Please select
0.28	4e-40	165	Hordeum vulgare	Contig14732_at	Contig14732	-	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	C.G.	S.X.	Please select
0.41	1e-123	444	Oryza sativa	Os02g0734300	AK059780.1	-	NUDIX hydrolase domain containing protein	5e-1	At2g01670	atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.219905.1.S1_at	pmrna36068	hypothetical protein	-	5e-1	At3g20390	endoribonuclease L-PSP family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	2e-87	323	Triticum aestivum	Ta.512.2.S1_at	BQ162169	-	-	6e-1	At5g55430	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1607562_at	CB339916	hypothetical protein LOC100260435	-	7e-6	At4g37660	ribosomal protein L12 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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