Gene omics information

Query gene ID	Zm.9038.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	97.0	Zm.9038.1.S1_at	BM331839	-	-	1e+0	At2g44530	ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative	S.X.	H.G.	Please select
0.44	55.7	Zm.13155.1.S1_at	BQ744909	lymphoid organ expressed yellow head virus receptor protein	-	1e-2	At2g35880	-	S.X.	H.G.	Please select
0.41	49.7	Zm.5851.11.A1_x_at	CO527835	hypothetical protein LOC100217054	-	3e-16	At4g37550	formamidase, putative / formamide amidohydrolase, putative	S.X.	H.G.	Please select
0.38	44.2	Zm.2702.2.S1_at	CA405056	hypothetical protein LOC100276342	-	3e+0	At5g24660	LSU2 (RESPONSE TO LOW SULFUR 2)	S.X.	H.G.	Please select
0.33	36.0	Zm.7605.1.S1_at	AY106015.1	30S ribosomal protein S17	-	4e-11	At1g49400	emb1129 (embryo defective 1129)	S.X.	H.G.	Please select
0.29	28.1	Zm.5046.1.S1_at	AY104119.1	hypothetical protein LOC100191234 /// hypothetical protein LOC100273435	-	3e-19	At3g53580	diaminopimelate epimerase family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.17309.1.A1_s_at	CK369677	t-snare	-	4e+0	At5g64680	unknown protein	S.X.	H.G.	Please select
0.25	21.3	Zm.3572.1.A1_at	BG873875	harpin-induced protein	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select
0.24	19.8	Zm.6391.1.A1_at	AI738295	hypothetical protein LOC100191443	-	4e-3	At3g13340	WD-40 repeat family protein	S.X.	H.G.	Please select
0.23	18.6	Zm.14051.1.S1_at	CF625739	hypothetical protein LOC100217091	-	5e-1	At5g38650	proteasome maturation factor UMP1 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	96.9	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.2	96.9	GSM253257	ZM_2d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.0	96.7	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.2	96.0	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
4.2	96.0	GSM253260	ZM_2d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.2	96.0	GSM202413	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
4.1	95.9	GSM253259	ZM_2d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.0	95.8	GSM253261	ZM_2d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Zm.869.1.A1_a_at	BQ539517	hypothetical protein LOC100192365	-	4e+0	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.869.1.A1_x_at	BQ539517	hypothetical protein LOC100192365	-	4e+0	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.3523.1.S1_at	AY105303.1	hypothetical protein LOC100276213	-	4e-1	At1g23060	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.19094.1.S1_at	CO522607	hypothetical protein LOC100279575	-	2e-4	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.15084.1.A1_at	BM350611	-	-	6e-2	At1g62240	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9987.1.A1_at	BM335812	-	-	9e-2	At5g12190	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.859.1.A1_at	CF060267	hypothetical protein LOC100191283	-	8e-1	At4g28420	aminotransferase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6353.1.S1_a_at	CA399677	heat shock protein STI	-	2e-14	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6353.1.S1_at	CA399677	heat shock protein STI	-	2e-14	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At2g44530	819061	ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative	F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;OBMFAPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-9	63	Glycine max	Gma.2042.1.S1_at	CD408331	-	-	3e-5	At3g27850	RPL12-C (ribosomal protein l12-c)	C.G.	S.X.	Please select
0.35	6e-69	260	Hordeum vulgare	Contig12793_at	Contig12793	-	-	6e+0	At5g39580	peroxidase, putative	C.G.	S.X.	Please select
0.37	3e-83	309	Oryza sativa	Os01g0662300	AF010581.1	-	Chloroplast 50S ribosomal protein L12	1e+0	At5g65140	trehalose-6-phosphate phosphatase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.5813.1.S1_at	CN524494	hypothetical protein	-	8e-21	At3g27850	RPL12-C (ribosomal protein l12-c)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	9e-76	284	Triticum aestivum	Ta.14671.2.S1_a_at	CK213901	-	-	2e+0	At5g24170	-	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1610239_at	CF202254.1	-	-	2e+0	At5g40300	integral membrane protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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