Gene omics information

Query gene ID	Zm.9017.1.A1_at
Gene name	Hypothetical protein LOC100193460
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	81.7	Zm.9017.1.A1_at	BM338660	Hypothetical protein LOC100193460	-	2e+0	At1g64290	F-box protein-related	S.X.	H.G.	Please select
0.88	96.7	Zm.3832.1.S1_at	AY112267.1	actin-depolymerizing factor	-	1e-13	At4g25590	ADF7 (actin depolymerizing factor 7)	S.X.	H.G.	Please select
0.67	85.8	Zm.10122.1.S1_at	BM380628	transmembrane emp24 domain-containing protein 10	-	2e-3	At1g57620	emp24/gp25L/p24 family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.6743.3.S1_at	AY104585.1	hypothetical protein LOC100216801	-	2e-10	At3g02420	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.5542.1.S1_at	CO518213	Hypothetical protein LOC100193112	-	7e-4	At3g15140	exonuclease family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.18462.1.S1_at	CO517427	-	-	1e+0	At4g09550	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.3058.1.A1_at	BM338821	glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform	-	6e-36	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	S.X.	H.G.	Please select
0.50	65.7	Zm.4613.1.A1_at	CK826972	-	-	5e-1	At1g73770	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.5	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.2	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-2	38	Zm.3001.1.A1_at	CK826660	-	-	7e-1	At3g18760	ribosomal protein S6 family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.2536.1.A1_at	CK347523	hypothetical protein LOC100216682	-	6e+0	At5g42960	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.12262.1.S1_at	CA826732	-	-	5e-2	At3g06830	pectinesterase family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6739.2.S1_a_at	BU582158	ABI3-interacting protein 2	-	5e-5	At5g48385	-	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6503.1.A1_at	CK370921	-	-	1e-1	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5699.1.A1_at	BM333318	ras-related protein Rab7 /// ras-related protein Rab7	-	2e-44	At3g18820	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.4985.1.A1_at	CO533545	ubiquitin-conjugating enzyme E2-17 kDa	-	2e-25	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.4917.1.A1_at	CK347849	-	-	3e-9	At3g11730	ATFP8	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.4437.1.S1_at	CO522989	cuc3 protein	-	2e-1	At1g76420	CUC3 (CUP SHAPED COTYLEDON3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	34	Arabidopsis thaliana	At1g64290	842734	F-box protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.psMA010xD14f_at	PsAffx.psMA010xD14f	-	-	5e+0	At1g60870	MEE9 (maternal effect embryo arrest 9)	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	Contig11098_at	Contig11098	-	-	4e-1	At3g58190	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	C.G.	S.X.	Please select
0.09	3e-41	171	Oryza sativa	Os07g0172900	AK065471.1	-	Biopterin transport-related protein BT1 familyprotein	7e-15	At2g32040	integral membrane transporter family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-1	36	Populus trichocarpa	PtpAffx.133960.1.A1_at	CV255039	-	-	2e+0	At5g28610	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	0	874	Triticum aestivum	TaAffx.57611.1.S1_at	CA626564	-	-	4e+0	At3g62720	XT1 (XYLOSYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1611616_at	CF406000	hypothetical protein LOC100250213	-	8e-12	At2g30530	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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