Gene omics information

Query gene ID	Zm.8927.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.8927.1.S1_at	BQ578253	-	-	5e-3	At2g41905	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.3350.1.A1_at	BM266649	DC2 protein	-	4e-29	At5g27720	emb1644 (embryo defective 1644)	S.X.	H.G.	Please select
0.44	55.7	Zm.3892.8.S1_at	CA404367	Elongation factor 1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.40	48.5	Zm.4903.1.S1_at	AI782917	hypothetical protein LOC100273473	-	1e+0	At3g26085	CAAX amino terminal protease family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.6850.1.S1_at	AI065468	-	-	2e+0	At3g01170	structural constituent of ribosome	S.X.	H.G.	Please select
0.31	31.6	Zm.15210.1.A1_at	BM269011	ARR1 protein-like	-	1e-3	At5g59570	myb family transcription factor	S.X.	H.G.	Please select
0.15	8.6	Zm.13812.2.S1_x_at	AI834047	60S ribosomal protein L11-1	-	2e-74	At4g18730	RPL16B	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
51.5	100.0	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
27.4	99.7	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
18.9	99.2	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
10.6	98.4	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
9.8	98.3	GSM253248	ZM_12h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.7	97.9	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.7	97.9	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
7.4	97.8	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.9	96.7	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	5e-35	147	Zm.2015.2.S1_at	BQ577950	pollen-specific arabinogalacta protein BAN102	-	6e-3	At2g41905	unknown protein	C.G.	S.X.	Please select
0.14	3e-33	141	Zm.2015.1.A1_at	AY104789.1	-	-	6e-3	At2g41905	unknown protein	C.G.	S.X.	Please select
0.16	3e-18	91	Zm.3019.1.A1_at	CK368018	pollen-specific arabinogalacta protein BAN102	-	1e+0	At2g41905	unknown protein	C.G.	S.X.	Please select
0.10	6e-7	54	Zm.10511.1.S1_at	CF011340	-	-	1e+0	At1g68765	IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)	C.G.	S.X.	Please select
0.05	4e-2	38	Zm.2034.1.S1_at	BE123271	hypothetical protein LOC100277458	-	1e+0	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.03	6e-1	34	ZmAffx.1041.1.A1_at	AI881782	-	-	3e+0	At5g53040	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.03	6e-1	34	ZmAffx.1041.1.S1_at	AI881782	-	-	3e+0	At5g53040	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.750.1.A1_at	CD999376	hypothetical protein LOC100191573 /// hypothetical protein LOC100276148	-	4e-2	At3g47920	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.3772.1.S1_at	CF010220	Zea m 1 allergen	-	6e-4	At2g40470	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-3	42	Arabidopsis thaliana	At2g41905	2745590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	PsAffx.CL1883Contig1_at	PsAffx.CL1883Contig1	-	-	9e+0	At4g29340	PRF4 (PROFILIN 4)	C.G.	S.X.	Please select
0.17	1e-17	89	Hordeum vulgare	Contig8178_at	Contig8178	-	-	5e-3	At2g41905	unknown protein	C.G.	S.X.	Please select
0.19	9e-25	115	Oryza sativa	Os02g0718100	CB964573	-	Conserved hypothetical protein	1e-1	At5g05550	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e-3	44	Populus trichocarpa	PtpAffx.216774.1.S1_s_at	pmrna31761	hypothetical protein	-	1e+0	At4g30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	5e-28	125	Triticum aestivum	Ta.28909.1.S1_at	CA619634	-	-	4e-3	At2g41905	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	30	Vitis vinifera	1620225_s_at	CD798094	-	-	1e+0	At5g38720	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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