Gene omics information

Query gene ID	Zm.8911.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.8911.1.A1_at	BM350783	-	-	4e-2	At5g23540	26S proteasome regulatory subunit, putative	S.X.	H.G.	Please select
0.80	94.0	Zm.9361.1.A1_at	BM349541	-	-	5e+0	At4g09580	-	S.X.	H.G.	Please select
0.60	77.8	Zm.10375.1.S1_at	BQ703821	-	-	2e-17	At2g35360	ubiquitin family protein	S.X.	H.G.	Please select
0.43	52.8	ZmAffx.1193.1.S1_at	BE025345	-	-	3e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.35	38.9	Zm.13252.1.S1_at	U50816.1	-	-	6e-1	At4g34730	ribosome-binding factor A family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.2269.1.S1_at	CF631922	-	-	1e-7	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6	95.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.8	93.5	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-103	375	Zm.4184.1.A1_at	CA404216	26S proteasome non-ATPase regulatory subunit 14	-	7e-38	At5g23540	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select
0.24	1e-74	280	Zm.15678.2.A1_x_at	CF632171	-	-	5e+0	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select
0.24	1e-74	280	Zm.15678.2.A1_at	CF632171	-	-	5e+0	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select
0.17	5e-43	174	Zm.17251.1.A1_at	BM336955	-	-	5e+0	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select
0.16	4e-40	165	Zm.15678.3.A1_x_at	BM073330	hypothetical protein LOC100193991 /// hypothetical protein LOC100273150 /// hypothetical protein LOC100277471	-	3e+0	At5g16640	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.16	4e-40	165	Zm.15678.3.A1_at	BM073330	hypothetical protein LOC100273150 /// hypothetical protein LOC100277471	-	3e+0	At5g16640	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.11	1e-34	147	Zm.15352.1.A1_x_at	CF627435	hypothetical protein LOC100279011	-	2e-1	At3g09590	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.11	1e-34	147	Zm.15352.1.A1_at	CF627435	hypothetical protein LOC100279011	-	2e-1	At3g09590	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.08	2e-20	99	Zm.14800.2.A1_a_at	BM268405	hypothetical protein LOC100278631	-	1e+0	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-2	40	Arabidopsis thaliana	At5g23540	832420	26S proteasome regulatory subunit, putative	F:unknown;P:response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process;C:nucleus, proteasome regulatory particle, lid subcomplex;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e-1	36	Glycine max	GmaAffx.14509.1.S1_at	BM523469	-	-	3e+0	At3g16360	AHP4 (HPT PHOSPHOTRANSMITTER 4)	C.G.	S.X.	Please select
0.20	7e-73	274	Hordeum vulgare	Contig3417_at	Contig3417	-	-	7e-87	At5g23540	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select
0.24	4e-65	250	Oryza sativa	Os01g0267200	AB037152.1	-	26S proteasome non-ATPase regulatory subunit 14(26S proteasome regulatory subunit rpn11)	3e-64	At5g23540	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-2	42	Populus trichocarpa	Ptp.351.1.S1_at	CK088519	hypothetical protein	-	4e-84	At5g23540	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	7e-118	424	Triticum aestivum	Ta.27539.1.S1_at	BT009132.1	-	-	2e-44	At5g23540	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select
0.10	1e-8	59	Vitis vinifera	1609978_at	CA813834	hypothetical protein LOC100247098	-	4e-143	At5g23540	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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