Gene omics information

Query gene ID Zm.888.1.S1_at
Gene name hypothetical protein LOC100216750
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8696.3Zm.888.1.S1_atCK828040hypothetical protein LOC100216750-1e-7At1g08880H2AXAS.X.H.G.
0.5369.1Zm.7570.1.A1_atBM078988flavonol synthase-like protein-2e-2At3g502102-oxoacid-dependent oxidase, putativeS.X.H.G.
0.5065.7Zm.3286.1.A1_atBG265986--2e+0At4g32551LUG (LEUNIG)S.X.H.G.
0.4352.8Zm.16816.1.S1_a_atAY104056.1hypothetical protein LOC100216551-2e-25At3g54560HTA11S.X.H.G.
0.4048.5Zm.3044.1.S1_atAW360661--2e-10At1g27900RNA helicase, putativeS.X.H.G.
0.4048.5Zm.1423.1.A1_atCF047935RING zinc finger protein-like-2e-7At1g69330zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.3233.4Zm.11837.1.A1_atBM381140hypothetical protein LOC100275424-1e+0At4g16380metal ion bindingS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.296.9GSM202306Mo17xB73 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.996.7GSM202303Mo17 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.896.6GSM202297Mo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.896.6GSM202299Mo17xB73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.696.4GSM202302B73xMo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.696.4GSM202296B73xMo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.296.0GSM202307B73xMo17 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.195.9GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.195.9GSM202295Mo17xB73 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.995.7GSM202304B73 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.319e-78289Zm.16911.1.A1_atBM332269--3e-11At4g27230HTA2 (histone H2A)C.G.S.X.
0.303e-74278Zm.6752.1.A1_atCK826604splicing factor, arginine/serine-rich 2-2e-6At4g27230HTA2 (histone H2A)C.G.S.X.
0.321e-61236Zm.14706.1.S1_atAY103710.1--2e-3At4g27230HTA2 (histone H2A)C.G.S.X.
0.307e-60230Zm.15894.1.A1_atBG873874--3e-14At4g27230HTA2 (histone H2A)C.G.S.X.
0.263e-59228Zm.13443.1.A1_atU08225.1Histone H2A-4e-11At5g02560HTA12C.G.S.X.
0.304e-55214Zm.16259.1.A1_x_atBQ539455hypothetical protein LOC100273269-1e-6At4g27230HTA2 (histone H2A)C.G.S.X.
0.327e-54210Zm.16259.2.A1_x_atCD951359hypothetical protein LOC100273269-4e-7At4g27230HTA2 (histone H2A)C.G.S.X.
0.337e-51200Zm.13002.1.S1_atCF041204--1e-10At4g27230HTA2 (histone H2A)C.G.S.X.
0.155e-24111Zm.13532.1.S1_atBQ618971hypothetical protein LOC100193816-1e-10At4g27230HTA2 (histone H2A)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.121e-757Arabidopsis thalianaAt1g08880837409H2AXAEncodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.---C.G.S.X.
0.232e-1377Glycine maxPsAffx.C4000035_atPsAffx.C4000035--4e+0At5g59870HTA6C.G.S.X.
0.352e-72272Hordeum vulgareContig412_x_atContig412--1e-3At4g27230HTA2 (histone H2A)C.G.S.X.
0.341e-86321Oryza sativaOs03g0279200CA753594-Histone H2A1e-7At5g02560HTA12C.G.S.X.
0.092e-448Populus trichocarpaPtpAffx.11933.1.S1_atCX659426histone 2-2e-12At1g08880H2AXAC.G.S.X.
0.351e-72274Triticum aestivumTa.28802.3.S1_atBJ228498--1e-3At4g27230HTA2 (histone H2A)C.G.S.X.
0.187e-1373Vitis vinifera1608927_atCF512418hypothetical protein LOC100241700-2e+0At1g51060HTA10C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage