Gene omics information

Query gene ID	Zm.886.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.886.2.S1_at	CK827386	-	-	5e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.3731.1.A1_at	BM339633	hypothetical protein LOC100194030	-	6e+0	At5g60950	COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)	S.X.	H.G.	Please select
0.60	77.8	Zm.9152.1.A1_at	BM267500	-	-	4e+0	At1g65484	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.5172.1.A1_at	BM266341	-	-	1e-1	At1g79960	OFP14 (OVATE FAMILY PROTEIN 14)	S.X.	H.G.	Please select
0.31	31.6	Zm.17587.1.S1_at	CK369775	hypothetical protein LOC100193716 /// hypothetical protein LOC100276274	-	5e+0	At5g67420	LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)	S.X.	H.G.	Please select
0.27	24.6	Zm.1129.1.A1_at	BE510577	-	-	1e+0	At1g80730	ZFP1 (ZINC-FINGER PROTEIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	98.0	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.8	97.9	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.8	97.9	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.9	97.7	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.6	97.6	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.5	97.5	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.5	97.5	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.1	97.4	GSM202316	Mo17xB73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.7	97.2	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.7	97.2	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	726	Zm.886.4.S1_x_at	BE051080	hypothetical protein LOC100274379	-	2e+0	At1g31750	proline-rich family protein	C.G.	S.X.	Please select
0.26	1e-145	515	Zm.886.5.A1_at	BU499802	-	-	1e+0	At1g31750	proline-rich family protein	C.G.	S.X.	Please select
0.51	1e-145	515	Zm.886.5.S1_a_at	BU499802	hypothetical protein LOC100274379	-	1e+0	At1g31750	proline-rich family protein	C.G.	S.X.	Please select
0.33	6e-120	430	Zm.886.1.A1_a_at	CD439596	hypothetical protein LOC100275372	-	3e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.32	1e-108	393	Zm.12295.2.S1_a_at	CD441109	stress responsive protein	-	2e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.30	1e-105	383	Zm.17254.1.A1_at	BM350630	-	-	2e-3	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.20	6e-83	307	Zm.886.6.S1_at	AI673870	-	-	1e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	6e-3	42	Zm.13200.1.A1_at	CF635119	hypothetical protein LOC100191192	-	8e-13	At3g25110	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	C.G.	S.X.	Please select
0.02	9e-2	38	Zm.13089.1.S1_at	CA404283	-	-	2e-5	At5g18640	lipase class 3 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-2	40	Arabidopsis thaliana	At2g39050	818491	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-2	40	Glycine max	PsAffx.CL577Contig1_at	PsAffx.CL577Contig1	-	-	2e-2	At5g15960	KIN1	C.G.	S.X.	Please select
0.58	2e-147	521	Hordeum vulgare	Contig1247_s_at	Contig1247	-	-	7e-4	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.48	1e-170	601	Oryza sativa	Os03g0327600	AK069815.1	-	Ricin B-related lectin domain containing protein	1e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	7e-2	40	Populus trichocarpa	PtpAffx.216823.1.S1_at	pmrna31859	hypothetical protein	-	5e+0	At5g50660	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	5e-141	502	Triticum aestivum	Ta.22817.2.S1_a_at	BJ319233	-	-	5e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Vitis vinifera	1606551_at	CF211871	hypothetical protein LOC100255969	-	6e-30	At4g25660	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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