Gene omics information

Query gene ID	Zm.8802.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.65	82.1	Zm.8802.1.A1_at	BM075706	-	-	4e+0	At3g05590	RPL18 (RIBOSOMAL PROTEIN L18)	S.X.	H.G.	Please select
0.75	90.8	Zm.5791.2.A1_at	AW438331	-	-	2e-2	At4g23570	SGT1A	S.X.	H.G.	Please select
0.70	87.0	Zm.18467.1.A1_at	AY107639.1	-	-	5e+0	At5g35920	CYP79A4P	S.X.	H.G.	Please select
0.65	82.1	Zm.18298.1.A1_at	CO531061	senescence-associated protein	-	1e+0	At3g54130	josephin family protein	S.X.	H.G.	Please select
0.64	81.7	Zm.12553.1.S1_at	AI666225	-	-	5e-1	At2g35760	integral membrane family protein	S.X.	H.G.	Please select
0.62	79.8	Zm.10128.2.S1_x_at	BM378587	-	-	3e+0	At2g38540	LP1	S.X.	H.G.	Please select
0.61	79.5	Zm.8774.1.A1_at	BM075843	-	-	5e+0	At5g20100	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.13919.1.A1_at	AF057523.1	hypoxically induced transcript 3	-	5e+0	At5g04210	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.60	77.8	Zm.11570.1.A1_at	CF057654	-	-	1e+0	At5g05550	transcription factor	S.X.	H.G.	Please select
0.59	76.1	Zm.15077.1.A1_at	CF057940	-	-	2e+0	At5g08315	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.2	99.4	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
13.8	98.8	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.3	98.5	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.0	98.4	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.3	98.2	GSM206293	Right pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.7	97.9	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.5	97.8	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	34	Zm.8880.1.S1_at	BM381716	hypothetical protein LOC100193583	-	6e-35	At5g66140	PAD2 (PROTEASOME ALPHA SUBUNIT D 2)	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.3444.1.A1_at	AI948251	-	-	4e+0	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.2350.1.A1_at	AW355965	-	-	1e+0	At5g47080	CKB1	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5944.1.A1_at	BG874229	pyruvate kinase, cytosolic isozyme	-	2e-97	At3g52990	pyruvate kinase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4743.1.S1_at	AI738395	-	-	7e+0	At5g28463	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3702.1.S1_at	AY104414.1	geranylgeranyl hydrogenase	-	6e-5	At1g74470	geranylgeranyl reductase	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.13253.1.S1_at	CF630336	-	-	1e-14	At4g08920	CRY1 (CRYPTOCHROME 1)	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.431.1.A1_at	AI676913	hypothetical protein LOC100193126	-	3e+0	At5g40620	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.431.1.S1_at	AI676913	Hypothetical protein LOC100193126	-	3e+0	At5g40620	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g05590	819725	RPL18 (RIBOSOMAL PROTEIN L18)	Encodes cytoplasmic ribosomal protein L18.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-1	36	Glycine max	GmaAffx.65512.1.S1_at	BE473589	-	-	2e-2	At4g19540	INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)	C.G.	S.X.	Please select
0.05	5e-1	34	Hordeum vulgare	HVSMEn0020A01f_at	HVSMEn0020A01f	-	-	7e+0	At5g50562	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	OsAffx.5136.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.76877.1.S1_at	BI071469	-	-	4e+0	At5g02470	DPA	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.15433.1.A1_at	BQ169129	-	-	3e+0	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please select
0.04	5e+0	30	Vitis vinifera	1621187_s_at	CF201896.1	-	-	8e+0	At5g50345	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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