Gene omics information

Query gene ID	Zm.8792.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.8792.1.A1_at	BM075656	-	-	5e+0	At5g56720	malate dehydrogenase, cytosolic, putative	S.X.	H.G.	Please select
0.61	79.5	Zm.607.1.A1_at	AF326495.1	plasma membrane integral protein ZmPIP2-6	-	2e-25	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	S.X.	H.G.	Please select
0.53	69.1	Zm.12033.1.A1_at	BM382797	cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase	-	8e-1	At3g59840	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.1177.1.S1_at	AY105040.1	hypothetical protein LOC100274218	-	3e-112	At5g03340	cell division cycle protein 48, putative / CDC48, putative	S.X.	H.G.	Please select
0.33	36.0	Zm.7617.1.S1_at	AB127981.1	minE protein	-	1e-7	At1g69390	ATMINE1 (Arabidopsis homologue of bacterial MinE 1)	S.X.	H.G.	Please select
0.23	18.6	Zm.15439.1.A1_at	CD219438	-	-	3e-3	At2g31820	ankyrin repeat family protein	S.X.	H.G.	Please select
0.14	7.7	Zm.1090.2.A1_a_at	BU645209	PVR3-like protein /// PVR3-like protein /// PVR3-like protein	-	1e+0	At3g23930	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	98.6	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.7	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.5	97.8	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
7.4	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	1e-48	192	Zm.12420.1.S1_at	BF728806	-	-	4e+0	At5g62810	PEX14	C.G.	S.X.	Please select
0.03	2e-6	52	Zm.6715.1.S1_a_at	AY104238.1	RING finger and CHY zinc finger domain-containing protein 1	-	2e-5	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	2e-6	52	Zm.6715.1.A1_at	AY104238.1	-	-	1e-3	At5g22920	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.5862.1.A1_at	BM333410	50S ribosomal protein L18	-	5e-4	At1g48350	ribosomal protein L18 family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.5173.1.A1_at	BM079174	-	-	5e-36	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.8401.2.S1_at	AI737075	-	-	1e+1	At5g48175	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5341.1.S1_at	AY105785.1	hypothetical protein AY105785 /// hypothetical protein LOC100272740	-	1e-14	At2g14260	PIP	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5319.1.S1_a_at	AY103567.1	lipoxygenase	-	4e-7	At3g22400	LOX5	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.3075.1.A1_at	CO520772	thymidylate kinase	-	2e+1	At3g61829	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g56720	835773	malate dehydrogenase, cytosolic, putative	F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	GmaAffx.49629.1.S1_at	AW567619	-	-	3e-1	At1g12030	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HM05O11r_at	HM05O11r	-	-	5e-1	At2g17540	unknown protein	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	OsAffx.12217.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	Ptp.7484.1.S1_s_at	CK109796	hypothetical protein	-	1e-28	At5g28350	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	TaAffx.84992.1.S1_at	CA626517	-	-	1e+0	At3g17152	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1616388_at	CF209145	hypothetical protein LOC100241550	-	2e-29	At1g73720	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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