Gene omics information

Query gene ID	Zm.879.1.A1_at
Gene name	hypothetical protein LOC100276616
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.879.1.A1_at	BM379556	hypothetical protein LOC100276616	-	7e+0	At5g35300	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.9708.1.A1_at	BQ538651	DNA binding protein	-	4e-1	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.12345.1.A1_at	BM416967	mediator complex subunit 10 CG5057-PA	-	2e-3	At1g26665	-	S.X.	H.G.	Please select
0.35	38.9	Zm.2010.1.S1_at	AW563146	-	-	4e+0	At1g26355	SP1L1 (SPIRAL1-LIKE1)	S.X.	H.G.	Please select
0.31	31.6	Zm.2846.1.A1_at	BG842354	-	-	1e+1	At3g22570	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.21	15.5	Zm.8818.1.A1_at	BM268303	-	-	9e-2	At2g01500	PFS2 (PRETTY FEW SEEDS 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-5	50	Zm.2745.1.A1_at	AW067061	hypothetical protein LOC100277999	-	5e-1	At3g58150	-	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.14272.4.S1_x_at	CK371502	Corn cystatin I	-	1e-1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	C.G.	S.X.	Please select
0.03	7e-1	34	Zm.581.1.S1_at	AF237945.1	HCF106C precursor protein	-	5e-1	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.219.1.A1_at	CO531918	-	-	3e+0	At2g35730	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.939.1.A1_at	AI820322	-	-	9e-16	At5g15400	U-box domain-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.939.1.S1_at	AI820322	-	-	9e-16	At5g15400	U-box domain-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.489.1.A1_at	AI691446	Hypothetical protein LOC100216860	-	3e+0	At2g07340	prefoldin-related KE2 family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5641.1.A1_at	AI629775	Na+/H+ antiporter, probable CP0838	-	1e-47	At3g19490	ATNHD1	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4160.1.A1_at	CF243936	indole-3-acetate beta-glucosyltransferase	-	1e-2	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e+0	32	Arabidopsis thaliana	At5g35300	833484	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	34	Glycine max	GmaAffx.67214.1.S1_at	BM527927	-	-	3e-1	At3g58150	-	C.G.	S.X.	Please select
0.39	1e-76	286	Hordeum vulgare	Contig13241_at	Contig13241	-	-	2e+0	At2g06570	unknown protein	C.G.	S.X.	Please select
0.41	8e-106	385	Oryza sativa	Os01g0242300	AK070082.1	-	Optic atrophy 3 family protein	5e-1	At5g65610	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-2	40	Populus trichocarpa	PtpAffx.216409.1.S1_at	pmrna31171	hypothetical protein	-	1e-5	At3g58150	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	1e-66	254	Triticum aestivum	Ta.5506.1.S1_at	BQ169896	-	-	2e+0	At2g06570	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1615918_at	CD797632	hypothetical protein LOC100247805	-	3e+0	At5g19050	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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