Gene omics information

Query gene ID	Zm.8716.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.8716.1.A1_at	BM075322	-	-	6e+0	At5g49525	unknown protein	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.1063.1.S1_at	AI881959	-	-	5e-5	At1g45130	BGAL5 (beta-galactosidase 5)	S.X.	H.G.	Please select
0.40	48.5	Zm.13322.1.A1_at	BM895136	-	-	1e+0	At1g52855	unknown protein	S.X.	H.G.	Please select
0.39	45.6	Zm.14765.1.A1_at	CB334162	-	-	5e+0	At4g10680	transcription factor IIB (TFIIB) family protein	S.X.	H.G.	Please select
0.39	45.6	Zm.14028.1.S1_at	CD439553	-	-	1e-5	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	S.X.	H.G.	Please select
0.39	45.6	Zm.1090.4.A1_at	BQ547886	-	-	2e+0	At4g17585	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.5048.2.S1_a_at	BM074541	endoplasmin	-	3e-34	At4g24190	SHD (SHEPHERD)	S.X.	H.G.	Please select
0.38	44.2	Zm.9379.1.A1_s_at	BM268447	origin recognition complex subunit 3	-	6e+0	At5g61650	CYCP4	S.X.	H.G.	Please select
0.36	41.3	Zm.4138.1.A1_at	AI855129	-	-	3e+0	At5g64680	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.6026.1.S1_at	CA405322	hypothetical protein LOC100194158	-	7e-21	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.5	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
37.3	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.8	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.1	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.2	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.5	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Zm.325.1.A1_at	AB042268.1	response regulator 6	-	2e-7	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.5020.1.S1_at	AI600437	hypothetical protein LOC100216870	-	1e-5	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.13848.1.S1_at	AY103654.1	-	-	2e-10	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.6107.1.A1_at	AY488135.1	allene oxide synthase	-	4e+0	At5g52480	-	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.3097.1.A1_at	AY103827.1	-	-	6e-6	At1g14790	RDR1 (RNA-DEPENDENT RNA POLYMERASE 1)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.18087.1.A1_at	CK985875	-	-	5e-18	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8277.1.S1_at	BM073493	Granule bound starch synthase IIa precursor	-	2e-20	At1g32900	starch synthase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7130.1.A1_at	BM340244	40S ribosomal protein S25-1	-	4e-16	At2g21580	40S ribosomal protein S25 (RPS25B)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4540.1.S1_at	AY107181.1	hypothetical protein LOC100280182	-	8e-1	At1g11650	RNA-binding protein 45 (RBP45), putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At5g49525	835013	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	PsAffx.C41000041_at	PsAffx.C41000041	-	-	2e+1	At5g33330	RNase H domain-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HZ01L11u_at	HZ01L11u	-	-	3e+0	At4g26240	unknown protein	C.G.	S.X.	Please select
0.05	8e-7	56	Oryza sativa	OsAffx.4277.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.220529.1.S1_at	pmrna36932	-	-	1e+0	At1g30515	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e-2	40	Triticum aestivum	Ta.599.1.S1_at	BE488971	-	-	2e-3	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1619944_at	CD798807	hypothetical protein LOC100253901	-	6e-11	At3g18740	60S ribosomal protein L30 (RPL30C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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