Gene omics information

Query gene ID	Zm.8703.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.8703.1.A1_at	BM337839	-	-	1e+0	At4g25330	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.15615.1.S1_at	CO533411	plant-specific domain TIGR01627 family protein	-	1e+1	At5g15840	CO (CONSTANS)	S.X.	H.G.	Please select
0.35	38.9	Zm.12626.2.A1_a_at	BG841446	craniofacial development protein 1	-	3e-1	At1g01640	speckle-type POZ protein-related	S.X.	H.G.	Please select
0.02	0.7	Zm.3529.1.A1_a_at	CO528072	hypothetical protein LOC100193299 /// hypothetical protein LOC100273402	-	2e+0	At3g11150	unknown protein	S.X.	H.G.	Please select
0.02	0.7	Zm.3612.1.A1_at	AY103746.1	hypothetical protein LOC100216585	-	2e-12	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	S.X.	H.G.	Please select
0.01	0.3	Zm.1482.3.A1_at	AY105872.1	hypothetical protein LOC100273779	-	4e-5	At5g50790	nodulin MtN3 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.9	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.0	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.2	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.2	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.5	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.5	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	3e-95	347	Zm.16578.2.A1_at	BM380057	-	-	5e+0	At4g04925	unknown protein	C.G.	S.X.	Please select
0.46	3e-95	347	Zm.16578.1.A1_a_at	CK369163	-	-	3e-1	At5g37820	NIP4	C.G.	S.X.	Please select
0.46	3e-95	347	Zm.16578.1.A1_s_at	CK369163	aquaporin NIP-type	-	3e-1	At5g37820	NIP4	C.G.	S.X.	Please select
0.06	6e-10	63	Zm.2006.1.A1_at	AF326483.1	NOD26-like membrane integral protein ZmNIP1-1	-	2e-1	At4g18910	NIP1	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5548.3.A1_at	BG837445	hypothetical protein LOC100193890	-	4e-10	At3g10740	ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.8793.1.A1_at	CD436545	-	-	3e+0	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.7117.1.A1_a_at	AY104703.1	hypothetical protein LOC100273279 /// remorin	-	5e+0	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.7117.1.A1_at	AY104703.1	-	-	5e+0	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.7117.2.A1_at	CF627265	hypothetical protein LOC100273279	-	3e+0	At5g40155	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g25330	828636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.C67000014_at	PsAffx.C67000014	-	-	3e+0	At3g04390	xanthine dehydrogenase family protein	C.G.	S.X.	Please select
0.06	2e-7	56	Hordeum vulgare	Contig19214_at	Contig19214	-	-	6e-4	At2g25810	TIP4	C.G.	S.X.	Please select
0.09	1e-2	42	Oryza sativa	Os01g0202800	NM_188316.1	-	Major intrinsic protein	9e-2	At4g18910	NIP1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-2	40	Populus trichocarpa	PtpAffx.11491.1.S1_a_at	DN496224	aquaporin, MIP family, NIP subfamily /// hypothetical protein	-	2e-6	At1g31885	transporter	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	6e-9	61	Triticum aestivum	Ta.3199.1.S1_a_at	BJ207484	-	-	5e+0	At5g21940	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	28	Vitis vinifera	1622746_at	CA814164	-	-	1e+1	Atcg00810	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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