Gene omics information

Query gene ID	Zm.8647.1.A1_at
Gene name	F-box family member
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	52.8	Zm.8647.1.A1_at	BM339399	F-box family member	-	2e+0	At5g15530	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.319.1.S1_at	AI670501	-	-	3e+0	At5g15830	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	S.X.	H.G.	Please select
0.53	69.1	Zm.2.1.A1_at	BM347992	Ferredoxin1	-	2e+0	At3g22820	allergen-related	S.X.	H.G.	Please select
0.50	65.7	Zm.4898.2.A1_at	AY108183.1	-	-	6e-11	At1g09270	IMPA-4 (IMPORTIN ALPHA ISOFORM 4)	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.1202.1.S1_at	BE128848	-	-	5e-2	At4g27350	unknown protein	S.X.	H.G.	Please select
0.23	18.6	Zm.2802.1.S1_at	CK368569	deoxyribonuclease tatD	-	3e-6	At3g52390	tatD-related deoxyribonuclease family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.2	GSM206294	Lower pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.7	97.9	GSM206295	Lower pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.7	97.9	GSM206293	Right pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.3	97.8	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.9	97.7	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.3	97.4	GSM206289	Upper pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.1	95.9	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.1	95.9	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.80	7e-75	280	Zm.17705.1.A1_at	CK369749	hypothetical protein LOC100279520	-	2e+0	At4g18890	brassinosteroid signalling positive regulator-related	C.G.	S.X.	Please select
0.06	1e-8	59	Zm.1212.1.S1_at	CF011510	hypothetical protein LOC100194335	-	2e-4	At3g55770	LIM domain-containing protein	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.13801.1.S1_at	AY104850.1	-	-	4e+0	At5g40730	AGP24	C.G.	S.X.	Please select
0.03	7e-1	34	Zm.7490.1.A1_at	CA401553	hypothetical protein LOC100279655	-	3e-1	At1g12400	DNA binding	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9121.1.A1_at	CF631233	hypothetical protein LOC100192710	-	1e-1	At1g20890	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5979.1.A1_at	AI666020	MYB-like protein E1	-	2e+0	At2g35980	YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5480.1.A1_at	AY103756.1	glycine-rich RNA-binding protein 7	-	5e-1	At2g46000	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.17702.1.A1_at	CK369720	-	-	2e+0	At3g10790	F-box family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.13570.1.A1_at	AY107966.1	3-oxoacyl-synthase III	-	4e-8	At1g62640	KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g15530	831406	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	GmaAffx.33122.1.S1_at	BQ611290	-	-	2e-1	At2g31410	unknown protein	C.G.	S.X.	Please select
0.16	2e-13	75	Hordeum vulgare	Contig15912_at	Contig15912	-	-	5e+0	Atmg01370	-	C.G.	S.X.	Please select
0.11	5e-8	59	Oryza sativa	Os02g0200900	BI811076	-	Leucine-rich repeat, cysteine-containing subtypecontaining protein	9e+0	At5g01470	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	Ptp.712.1.A1_s_at	CK087909	histone H1	-	7e-6	At1g06760	histone H1, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	TaAffx.83019.1.S1_at	CA663172	-	-	1e+0	At4g38230	CPK26	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1619494_at	CA810687	hypothetical protein LOC100258992	-	1e+0	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage