Gene omics information

Query gene ID	Zm.8617.1.A1_at
Gene name	hypothetical protein LOC100194322
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.5	Zm.8617.1.A1_at	BM074921	hypothetical protein LOC100194322	-	2e+0	At4g29810	ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)	S.X.	H.G.	Please select
0.53	69.1	Zm.5058.1.A1_at	BG266535	hypothetical protein LOC100217195	-	4e+0	At4g33960	unknown protein	S.X.	H.G.	Please select
0.49	61.9	Zm.17085.1.A1_at	AW562719	sialyltransferase like protein	-	7e-8	At1g08660	glycosyl transferase family 29 protein / sialyltransferase family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.5965.1.A1_at	AI665966	Hypothetical protein LOC100192560	-	2e+0	At5g19140	AILP1	S.X.	H.G.	Please select
0.47	59.9	Zm.12165.1.A1_at	BI595866	ABC-type Co2+ transport system, permease component	-	4e-1	At1g15900	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.13669.1.A1_at	AY107043.1	-	-	2e-1	At3g26420	ATRZ-1A	S.X.	H.G.	Please select
0.41	49.7	Zm.5676.1.A1_at	AY103939.1	-	-	3e-1	At5g14710	-	S.X.	H.G.	Please select
0.41	49.7	Zm.18045.1.A1_at	BM080270	-	-	8e-4	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select
0.41	49.7	Zm.1462.1.S1_at	BE050472	hypothetical protein LOC100276194	-	1e+0	At5g41760	nucleotide-sugar transporter family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.9564.1.S1_at	AY106249.1	Transcribed sequence 1087 protein	-	8e-1	At3g01323	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	98.3	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.8	97.9	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.5	97.8	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.9	96.7	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.8	96.6	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.6	96.4	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.3	96.1	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.7	95.4	GSM206324	Upper pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-4	46	Zm.14576.1.S1_a_at	AI947537	nodulin-like protein	-	6e-2	At5g10360	EMB3010 (embryo defective 3010)	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.12740.1.S1_at	CA404183	hypothetical protein LOC100194228	-	4e-12	At5g40440	ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3)	C.G.	S.X.	Please select
0.08	2e-1	36	Zm.6861.1.A1_at	U83625.1	MEK homolog1	-	1e-24	At5g56580	MKK6 (MAP KINASE KINASE 6)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.8141.1.A1_at	AY108955.1	hypothetical protein LOC100191434	-	4e+0	At4g35985	senescence/dehydration-associated protein-related	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.15221.1.S1_at	CF009185	hypothetical protein LOC100278728	-	1e+0	At4g30390	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9561.1.A1_at	AW433482	calmodulin binding protein	-	7e-7	At5g57580	calmodulin-binding protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9556.1.A1_at	BM382552	-	-	4e-1	At5g63480	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.6749.1.A1_at	BM079523	calmodulin binding protein	-	5e-8	At5g57580	calmodulin-binding protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.54.1.S1_at	L25805.1	alpha-amylase	-	3e-3	At4g25000	AMY1 (ALPHA-AMYLASE-LIKE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e+0	34	Arabidopsis thaliana	At4g29810	829103	ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)	encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	9e-3	42	Glycine max	Gma.16710.1.S1_at	AW348493	Mitogen-activated protein kinase kinase MAPKK2	-	2e-7	At4g29810	ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)	C.G.	S.X.	Please select
0.30	9e-13	73	Hordeum vulgare	Contig24896_at	Contig24896	-	-	4e+0	At4g24240	WRKY7	C.G.	S.X.	Please select
0.33	5e-67	256	Oryza sativa	Os06g0147800	AK111598.1	-	Mitogen-activated protein kinase kinase 2	3e-3	At4g29810	ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.223764.1.S1_at	pmrna41927	-	-	4e-9	At3g17410	serine/threonine protein kinase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	3e-20	99	Triticum aestivum	TaAffx.103414.1.S1_at	CA665233	-	-	7e+0	At5g10160	beta-hydroxyacyl-ACP dehydratase, putative	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1611351_at	CD717072	-	-	3e-6	At3g04550	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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