CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.858.1.A1_at

Gene name hypothetical protein LOC100216691

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 58.4 Zm.858.1.A1_at BM073310 hypothetical protein LOC100216691 - 2e+0 At4g12350 MYB42 (myb domain protein 42) S.X. H.G.
0.47 59.9 Zm.18504.1.A1_at CF626348 hypothetical protein LOC100279335 - 2e+0 At4g12490 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.29 28.1 Zm.19167.1.A1_at AI629472 hypothetical protein LOC100194096 - 1e-17 At4g10000 electron carrier/ protein disulfide oxidoreductase S.X. H.G.
0.29 28.1 Zm.564.1.S1_a_at AF244704.1 glutathione S-transferase GST 39 - 3e-2 At2g36640 ATECP63 (EMBRYONIC CELL PROTEIN 63) S.X. H.G.
0.21 15.5 Zm.4164.4.A1_a_at BM267227 - - 3e+1 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) S.X. H.G.
0.13 6.8 Zm.3263.1.A1_at BG842806 nudix hydrolase 13 - 2e+0 At3g52525 OFP6 (OVATE FAMILY PROTEIN 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.8 GSM206319 Lower pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.9 95.7 GSM375794 Deep-sowing 10d treatment UCZ, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.5 95.1 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.5 95.1 GSM206317 Right pulvinus control total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.4 94.9 GSM206312 Upper pulvinus 2 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.4 94.9 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.4 94.9 GSM385709 Deep-sowing 10d treatment TIBA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
3.3 94.7 GSM206318 Lower pulvinus 2 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
3.2 94.5 GSM206314 Upper pulvinus 15 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 Zm.15828.1.A1_at AI711977 - - 4e-29 At5g59240 40S ribosomal protein S8 (RPS8B) C.G. S.X.
0.02 2e-1 36 Zm.14044.1.A1_at CO520098 hypothetical protein LOC100275866 - 1e+0 At2g34120 unknown protein C.G. S.X.
0.01 8e-1 34 Zm.630.1.A1_at AF127022.1 RNA polymerase2 - 1e-7 At2g24120 SCA3 (SCABRA 3) C.G. S.X.
0.02 8e-1 34 Zm.6017.1.A1_at AI666208 hypothetical protein LOC100274747 /// hypothetical protein LOC100277021 - 2e+0 At4g08230 glycine-rich protein C.G. S.X.
0.01 8e-1 34 Zm.5828.1.A1_at BG320943 phosphoglycerate kinase - 2e-29 At1g56190 phosphoglycerate kinase, putative C.G. S.X.
0.02 8e-1 34 Zm.5310.1.A1_at AI619202 hypothetical protein LOC100275354 - 4e+0 At3g15820 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.01 8e-1 34 Zm.14828.1.S1_at AJ430632.1 m15 protein - 8e-10 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.01 8e-1 34 Zm.14531.1.A1_at AY111968.1 invertase cell wall3 - 1e-12 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) C.G. S.X.
0.02 8e-1 34 Zm.14589.1.A1_a_at CA404702 - - 4e-11 At4g21710 NRPB2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At4g12350 826844 MYB42 (myb domain protein 42) Encodes a putative transcription factor (MYB42). - - - C.G. S.X.
0.15 4e-5 50 Glycine max GmaAffx.79662.1.S1_at BI316380 - - 3e-4 At1g24050 unknown protein C.G. S.X.
0.46 9e-149 525 Hordeum vulgare Contig3064_at Contig3064 - - 6e-1 At5g23820 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.50 2e-156 553 Oryza sativa Os02g0741900 AK068461.1 - Conserved hypothetical protein 2e+0 At1g24050 unknown protein C.G. S.X.
0.09 3e+0 34 Populus trichocarpa PtpAffx.2347.1.S1_at BU892539 hypothetical protein - 2e-12 At1g24050 unknown protein C.G. S.X.
0.65 0 777 Triticum aestivum Ta.12955.1.A1_at CD491293 - - 1e+0 At1g24050 unknown protein C.G. S.X.
0.13 1e-4 46 Vitis vinifera 1620552_at CF568948 - - 5e-2 At1g24050 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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